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Report for CCDS547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
547.1 Public Homo sapiens 1 TAL1 24 110 108 CCDS HistoryNCBI Gene:6886Re-query CCDS DB by CCDS ID:547.1Re-query CCDS DB by GeneID:6886See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294339.3 ENSP00000294339.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000294339.3Link to Ensembl Protein Viewer:ENSP00000294339.3Re-query CCDS DB by Nucleotide ID:ENST00000294339Re-query CCDS DB by Protein ID:ENSP00000294339
Original member Current member EBI ENST00000371884.6 ENSP00000360951.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371884.6Link to Ensembl Protein Viewer:ENSP00000360951.1Re-query CCDS DB by Nucleotide ID:ENST00000371884Re-query CCDS DB by Protein ID:ENSP00000360951
Original member Current member EBI ENST00000691006.1 ENSP00000510655.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000691006.1Link to Ensembl Protein Viewer:ENSP00000510655.1Re-query CCDS DB by Nucleotide ID:ENST00000691006Re-query CCDS DB by Protein ID:ENSP00000510655
Original member Current member NCBI NM_001287347.2 NP_001274276.1 Accepted alive Link to Nucleotide Sequence:NM_001287347.2Link to Protein Sequence:NP_001274276.1Re-query CCDS DB by Nucleotide ID:NM_001287347Re-query CCDS DB by Protein ID:NP_001274276Link to BLAST:NP_001274276.1
Original member Current member NCBI NM_001290403.2 NP_001277332.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001290403.2Link to Protein Sequence:NP_001277332.1Re-query CCDS DB by Nucleotide ID:NM_001290403Re-query CCDS DB by Protein ID:NP_001277332Link to BLAST:NP_001277332.1
Original member Current member NCBI NM_001290404.1 NP_001277333.1 Accepted alive Link to Nucleotide Sequence:NM_001290404.1Link to Protein Sequence:NP_001277333.1Re-query CCDS DB by Nucleotide ID:NM_001290404Re-query CCDS DB by Protein ID:NP_001277333Link to BLAST:NP_001277333.1
Original member Current member NCBI NM_001290405.1 NP_001277334.1 Accepted alive Link to Nucleotide Sequence:NM_001290405.1Link to Protein Sequence:NP_001277334.1Re-query CCDS DB by Nucleotide ID:NM_001290405Re-query CCDS DB by Protein ID:NP_001277334Link to BLAST:NP_001277334.1
Original member Current member NCBI NM_003189.5 NP_003180.1 Accepted alive Link to Nucleotide Sequence:NM_003189.5Link to Protein Sequence:NP_003180.1Re-query CCDS DB by Nucleotide ID:NM_003189Re-query CCDS DB by Protein ID:NP_003180Link to BLAST:NP_003180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274276.1 331 P17542-1 331 100% 0 0
NP_001277332.1 331 P17542-1 331 100% 0 0
NP_001277333.1 331 P17542-1 331 100% 0 0
NP_001277334.1 331 P17542-1 331 100% 0 0
NP_003180.1 331 P17542-1 331 100% 0 0

Chromosomal Locations for CCDS 547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 47219720 47220174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47224004 47224098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47225443 47225888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGACCGAGCGGCCGCCGAGCGAGGCGGCTCGCAGTGACCCCCAGCTAGAGGGACGGGACGCGGCCGAGG
CCAGCATGGCCCCCCCGCACCTGGTCCTGCTGAACGGCGTCGCCAAGGAGACGAGCCGCGCGGCCGCAGC
GGAGCCCCCAGTCATCGAACTGGGCGCGCGCGGAGGCCCGGGGGGCGGCCCTGCCGGTGGGGGCGGCGCC
GCGAGAGACTTAAAGGGCCGCGACGCGGCGACGGCCGAAGCGCGCCATCGGGTGCCCACCACCGAGCTGT
GCAGACCTCCCGGGCCCGCCCCGGCCCCCGCGCCCGCCTCGGTTACAGCGGAGCTGCCCGGCGACGGCCG
CATGGTGCAGCTGAGTCCTCCCGCGCTGGCTGCCCCCGCCGCCCCCGGCCGCGCGCTGCTCTACAGCCTC
AGCCAGCCGCTGGCCTCTCTCGGCAGCGGGTTCTTTGGGGAGCCGGATGCCTTCCCTATGTTCACCACCA
ACAATCGAGTGAAGAGGAGACCTTCCCCCTATGAGATGGAGATTACTGATGGTCCCCACACCAAAGTTGT
GCGGCGTATCTTCACCAACAGCCGGGAGCGATGGCGGCAGCAGAATGTGAACGGGGCCTTTGCCGAGCTC
CGCAAGCTGATCCCCACACATCCCCCGGACAAGAAGCTCAGCAAGAATGAGATCCTCCGCCTGGCCATGA
AGTATATCAACTTCTTGGCCAAGCTGCTCAATGACCAGGAGGAGGAGGGCACCCAGCGGGCCAAGACTGG
CAAGGACCCTGTGGTGGGGGCTGGTGGGGGTGGAGGTGGGGGAGGGGGCGGCGCGCCCCCAGATGACCTC
CTGCAAGACGTGCTTTCCCCCAACTCCAGCTGCGGCAGCTCCCTGGATGGGGCAGCCAGCCCGGACAGCT
ACACGGAGGAGCCCGCGCCCAAGCACACGGCCCGCAGCCTCCATCCTGCCATGCTGCCTGCCGCCGATGG
AGCCGGCCCTCGGTGA

Translation (331 aa):
MTERPPSEAARSDPQLEGRDAAEASMAPPHLVLLNGVAKETSRAAAAEPPVIELGARGGPGGGPAGGGGA
ARDLKGRDAATAEARHRVPTTELCRPPGPAPAPAPASVTAELPGDGRMVQLSPPALAAPAAPGRALLYSL
SQPLASLGSGFFGEPDAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAEL
RKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDDL
LQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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