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Report for CCDS24397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24397.1 Public Mus musculus 11 Rhbdd3 23 108 98 CCDS HistoryNCBI Gene:279766Re-query CCDS DB by CCDS ID:24397.1Re-query CCDS DB by GeneID:279766See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101610.9 ENSMUSP00000099131.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101610.9Link to Ensembl Protein Viewer:ENSMUSP00000099131.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101610Re-query CCDS DB by Protein ID:ENSMUSP00000099131
Original member Current member EBI ENSMUST00000109878.8 ENSMUSP00000105504.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109878.8Link to Ensembl Protein Viewer:ENSMUSP00000105504.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109878Re-query CCDS DB by Protein ID:ENSMUSP00000105504
Original member Current member NCBI NM_001290492.1 NP_001277421.1 Accepted alive Link to Nucleotide Sequence:NM_001290492.1Link to Protein Sequence:NP_001277421.1Re-query CCDS DB by Nucleotide ID:NM_001290492Re-query CCDS DB by Protein ID:NP_001277421Link to BLAST:NP_001277421.1
Original member Current member NCBI NM_001290493.1 NP_001277422.1 Accepted alive Link to Nucleotide Sequence:NM_001290493.1Link to Protein Sequence:NP_001277422.1Re-query CCDS DB by Nucleotide ID:NM_001290493Re-query CCDS DB by Protein ID:NP_001277422Link to BLAST:NP_001277422.1
Original member Current member NCBI NM_177370.4 NP_796344.1 Accepted alive Link to Nucleotide Sequence:NM_177370.4Link to Protein Sequence:NP_796344.1Re-query CCDS DB by Nucleotide ID:NM_177370Re-query CCDS DB by Protein ID:NP_796344Link to BLAST:NP_796344.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277421.1 385 Q8BP97-1 385 100% 0 0
NP_001277422.1 385 Q8BP97-1 385 100% 0 0
NP_796344.1 385 Q8BP97-1 385 100% 0 0

Chromosomal Locations for CCDS 24397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5103202 5103349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5104021 5104404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5105185 5105347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5105433 5105717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5105800 5105977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGCATGCCTGGGAGGCCCCTGGCTCACTGTCCCGGGCCCTGCCCCTTGCTTCCTCAGTCCTGATGCTGC
TGCTGAGCTGTCTGTGGTTATTGGGGGCTGGCCCCAGCCTCAGATTGGCTCCAGAGCTGCTAATGGAACC
CTGGCAGGTGCACAGGCTGCTGACCCATGCTCTGGGCCACACTGCACTGCCAGGCCTGCTCCTGAGCCTG
CTGCTTCTGCCCACTCTGGGCTGGTGGCAGGAGTGCCATCTGGGCACTGTGCGCTTCCTGCACAACTCCA
CTGTGCTTGCCCTGGCTACTGGGCTGCTGGCTGTGCTGCTGGCGGGCCTTGGGGTGTCCGGTGCGGCTGG
AGGCTGTGGCTATATGCCTGTCCATCTAGCTATGCTGGCTGGACAGAGTCACCACCCTGGATGGCCTCAG
AGGACACTGCCACCATGGCTGCTACCATGGCTGCTGCTGGCCCTGACCCTGCTGCTCAGCTCTGAGCCAC
CCTTCCTGCAGCTCCTTTGTGGCCTTCTCACTGGCCTAGCCTATGCTGCTGGGGCCTTCCAGTGGCTGGA
GCTCTCAGAGCAGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAAGTCTCTGGCCCGATGCTGGCCG
CTGAGGCTCTTTCCCACCCCGGGCAGTCTGGGTGAGCTGCCTGTCACTTATCCTGCTGGAGTGAGGCCTG
CCACCCCTAGACCTCCTTACCTGGCTTCCTCAGACTCCTGGCCTCACAGTGATGGCTCTGCTCAGCTCCC
ACCACGCCTGGGGCCTGGACAGCTGACATGGAAGAACTCGGAGAGGGGCTTGGACTGGGCTGGGTCTAGC
TTTGCTTCAGCAACGACGATGTGGGCAGCCCTAGACGAGCAGATGCTACAGGAAGGGATCCAGGCCTCCC
TTCTTGATGTGTCAGTTCAGGGTTCCCAGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCTTCTCTAAG
GCTGCAGCAGCTACAGCACATGGGATTCCCCACTGAGCAGGCTGCAGTGGCCTTGGCAGCTACAGGGCGT
GTAGAGGGGGCAGTGTCACTGCTGGTGGAAGGGCTAGTGGACACTGAGGCCCTAGTGACTGAGGGAAGGA
GTAGCCCTGCCCACTGCACAGGCACTGGGGCCTCATAG

Translation (385 aa):
MHAWEAPGSLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLMEPWQVHRLLTHALGHTALPGLLLSL
LLLPTLGWWQECHLGTVRFLHNSTVLALATGLLAVLLAGLGVSGAAGGCGYMPVHLAMLAGQSHHPGWPQ
RTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLTGLAYAAGAFQWLELSEQRLQVLQEGVLCKSLARCWP
LRLFPTPGSLGELPVTYPAGVRPATPRPPYLASSDSWPHSDGSAQLPPRLGPGQLTWKNSERGLDWAGSS
FASATTMWAALDEQMLQEGIQASLLDVSVQGSQSSLWLPKPSVSSLRLQQLQHMGFPTEQAAVALAATGR
VEGAVSLLVEGLVDTEALVTEGRSSPAHCTGTGAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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