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Report for CCDS71033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71033.1 Public Mus musculus 2 Pbx3 23 108 98 CCDS HistoryNCBI Gene:18516Re-query CCDS DB by CCDS ID:71033.1Re-query CCDS DB by GeneID:18516See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113132.8 ENSMUSP00000108757.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113132.8Link to Ensembl Protein Viewer:ENSMUSP00000108757.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113132Re-query CCDS DB by Protein ID:ENSMUSP00000108757
Original member NCBI NM_001290576.1 NP_001277505.1 Updated not alive Link to Nucleotide Sequence:NM_001290576.1Link to Protein Sequence:NP_001277505.1Re-query CCDS DB by Nucleotide ID:NM_001290576Re-query CCDS DB by Protein ID:NP_001277505
Current member NCBI NM_001290576.2 NP_001277505.1 Accepted alive Link to Nucleotide Sequence:NM_001290576.2Link to Protein Sequence:NP_001277505.1Re-query CCDS DB by Nucleotide ID:NM_001290576Re-query CCDS DB by Protein ID:NP_001277505Link to BLAST:NP_001277505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277505.1 351 O35317-2 351 100% 0 0

Chromosomal Locations for CCDS 71033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34175908 34175954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34178177 34178342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34204780 34204915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34213252 34213442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34224405 34224646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34370824 34370897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34371721 34371920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGACGATCAATCCAGGATGCTGCAGACTCTGGCCGGGGTGAACCTGGCCGGCCACTCGGTCCAGGGGG
GTATGGCTCTGCCGCCTCCCCCTCACGGCCACGAAGGGGCGGACGGCGACGGCAGGAAGCAGGACATCGG
CGACATCCTCCACCAGATCATGACCATCACCGACCAGAGCTTGGACGAGGCGCAAGCAAAGAAACATGCT
CTGAACTGTCACAGAATGAAACCGGCGCTCTTCAGCGTCTTGTGTGAGATCAAAGAGAAAACAGGTCTCA
GCATCAGAGGAGCCCAGGAGGAAGACCCTCCCGACCCCCAGCTAATGAGACTGGACAATATGCTTTTGGC
AGAAGGGGTTTCAGGTCCTGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCGGCAGCCTCTGGA
GGTTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATC
ACACAGAACTGGAGAAATATGAACAGGCATGTAATGAATTCACAACACATGTGATGAACCTTCTCCGAGA
ACAGAGTAGAACGCGTCCCATTTCCCCGAAAGAGATCGAAAGGATGGTGGGCATCATCCATCGGAAATTT
AGTTCCATTCAGATGCAGCTCAAGCAAAGCACGTGTGAAGCAGTTATGATTTTGAGATCAAGGTTCCTTG
ATGCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCTACGGAAATCTTGAATGAATATTTTTACTCACA
CCTCAGCAACCCCTACCCCAGTGAAGAAGCCAAAGAGGAGCTGGCCAAGAAATGCAGCATCACAGTATCA
CAGGTATCCAACTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAACATCGGCAAATTTCAAGAGGAGG
CCAATCTCTATGCTGCAAAAACAGCCGTGACAGCCGCACATGCAGTGGCTGCAGCCGTGCAGAACAACCA
GACCAACTCACCCACCACGCCAAACTCTGGTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTA
CAGTGA

Translation (351 aa):
MDDQSRMLQTLAGVNLAGHSVQGGMALPPPPHGHEGADGDGRKQDIGDILHQIMTITDQSLDEAQAKKHA
LNCHRMKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASG
GSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKF
SSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVS
QVSNWFGNKRIRYKKNIGKFQEEANLYAAKTAVTAAHAVAAAVQNNQTNSPTTPNSGGYPPSCYQSDGRL
Q


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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