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Report for CCDS31756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31756.1 Public Homo sapiens 12 RECQL 24 110 108 CCDS HistoryNCBI Gene:5965Re-query CCDS DB by CCDS ID:31756.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31756.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421138.6 ENSP00000395449.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421138.6Link to Ensembl Protein Viewer:ENSP00000395449.2Re-query CCDS DB by Nucleotide ID:ENST00000421138Re-query CCDS DB by Protein ID:ENSP00000395449
Original member Current member EBI ENST00000444129.7 ENSP00000416739.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444129.7Link to Ensembl Protein Viewer:ENSP00000416739.2Re-query CCDS DB by Nucleotide ID:ENST00000444129Re-query CCDS DB by Protein ID:ENSP00000416739
Original member Current member NCBI NM_002907.4 NP_002898.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002907.4Link to Protein Sequence:NP_002898.2Re-query CCDS DB by Nucleotide ID:NM_002907Re-query CCDS DB by Protein ID:NP_002898Link to BLAST:NP_002898.2
Original member Current member NCBI NM_032941.3 NP_116559.1 Accepted alive Link to Nucleotide Sequence:NM_032941.3Link to Protein Sequence:NP_116559.1Re-query CCDS DB by Nucleotide ID:NM_032941Re-query CCDS DB by Protein ID:NP_116559Link to BLAST:NP_116559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002898.2 649 P46063 649 100% 0 0
NP_116559.1 649 P46063 649 100% 0 0

Chromosomal Locations for CCDS 31756.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 21470194 21470346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21470969 21471098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21471428 21471647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21473551 21473642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21474841 21474979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21475468 21475585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21475676 21475824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21476911 21476992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21477803 21477969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21483376 21483574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21486479 21486585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21490199 21490378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21491519 21491716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21499555 21499570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGCGTCCGTTTCAGCTCTAACTGAGGAACTGGATTCTATAACCAGTGAGCTACATGCAGTAGAAATTC
AAATTCAAGAACTTACGGAAAGGCAACAAGAGCTTATTCAGAAAAAAAAAGTCCTGACAAAGAAAATAAA
GCAGTGTTTAGAGGATTCTGATGCCGGGGCAAGCAATGAATATGATTCTTCACCTGCCGCTTGGAATAAA
GAAGATTTTCCATGGTCTGGTAAAGTTAAAGATATTCTGCAAAATGTCTTTAAACTGGAAAAGTTCAGAC
CACTTCAGCTTGAAACTATTAACGTAACAATGGCTGGAAAGGAGGTATTTCTTGTTATGCCTACAGGAGG
TGGAAAGAGCTTATGTTACCAGTTACCAGCATTATGTTCAGATGGTTTTACACTCGTCATTTGCCCATTG
ATCTCTCTTATGGAAGACCAATTAATGGTTTTAAAACAATTAGGAATTTCAGCAACCATGTTAAATGCTT
CTAGTTCTAAGGAGCATGTTAAATGGGTTCATGCTGAAATGGTAAATAAAAACTCCGAGTTAAAGCTGAT
TTATGTGACTCCAGAGAAAATTGCAAAAAGCAAAATGTTTATGTCAAGACTAGAGAAAGCCTATGAAGCA
AGGAGATTTACTCGAATTGCTGTGGATGAAGTTCACTGCTGTAGTCAGTGGGGACATGATTTCAGACCTG
ATTATAAGGCACTTGGTATCTTAAAGCGGCAGTTCCCTAACGCATCACTAATTGGGCTGACTGCAACTGC
AACAAATCACGTTTTGACGGATGCTCAGAAAATTTTGTGCATTGAAAAGTGTTTTACTTTTACAGCTTCT
TTTAATAGGCCAAATCTATATTATGAGGTTCGGCAGAAGCCCTCAAACACTGAAGATTTTATTGAGGATA
TTGTAAAGCTCATTAATGGGAGATACAAAGGGCAATCAGGAATCATATATTGTTTTTCTCAGAAAGACTC
TGAACAAGTTACGGTTAGTTTGCAGAATCTGGGAATTCATGCAGGTGCTTACCATGCCAATTTGGAGCCA
GAAGATAAGACCACAGTTCATAGAAAATGGTCAGCCAATGAAATTCAGGTAGTAGTGGCAACTGTTGCAT
TTGGTATGGGAATTGATAAGCCAGATGTGAGGTTTGTTATCCATCATTCAATGAGTAAATCCATGGAAAA
TTATTACCAAGAGAGTGGACGTGCAGGTCGAGATGACATGAAAGCAGACTGTATTTTGTACTACGGCTTT
GGAGATATATTCAGAATAAGTTCAATGGTGGTGATGGAAAATGTGGGACAGCAGAAGCTTTATGAGATGG
TATCATACTGTCAAAACATAAGCAAATGTCGTCGTGTGTTGATGGCTCAACATTTTGATGAAGTATGGAA
CTCAGAAGCATGTAACAAAATGTGCGATAACTGCTGTAAAGACAGTGCATTTGAAAGAAAGAACATAACA
GAGTACTGCAGAGATCTAATCAAGATCCTGAAGCAGGCAGAGGAACTGAATGAAAAACTCACTCCATTGA
AACTGATTGATTCTTGGATGGGAAAGGGTGCAGCAAAACTGAGAGTAGCAGGTGTTGTGGCTCCCACACT
TCCTCGTGAAGATCTGGAGAAGATTATTGCACACTTTCTAATACAGCAGTATCTTAAAGAAGACTACAGT
TTTACAGCTTATGCTACCATTTCGTATTTGAAAATAGGACCTAAAGCTAATCTTCTGAACAATGAGGCAC
ATGCTATTACTATGCAAGTGACAAAGTCCACGCAGAACTCTTTCAGGGCTGAATCGTCTCAAACTTGTCA
TTCTGAACAAGGTGATAAAAAGATGGAGGAAAAAAATTCAGGCAACTTCCAGAAGAAGGCTGCAAACATG
CTTCAGCAATCTGGTTCTAAGAATACAGGAGCTAAGAAAAGAAAAATCGATGATGCCTGA

Translation (649 aa):
MASVSALTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDAGASNEYDSSPAAWNK
EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPL
ISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA
RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS
FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEP
EDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGF
GDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNIT
EYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYS
FTAYATISYLKIGPKANLLNNEAHAITMQVTKSTQNSFRAESSQTCHSEQGDKKMEEKNSGNFQKKAANM
LQQSGSKNTGAKKRKIDDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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