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Report for CCDS1348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1348.1 Public Homo sapiens 1 RGS16 24 110 108 CCDS HistoryNCBI Gene:6004Re-query CCDS DB by CCDS ID:1348.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1348.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367558.6 ENSP00000356529.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367558.6Link to Ensembl Protein Viewer:ENSP00000356529.5Re-query CCDS DB by Nucleotide ID:ENST00000367558Re-query CCDS DB by Protein ID:ENSP00000356529
Original member Current member NCBI NM_002928.4 NP_002919.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002928.4Link to Protein Sequence:NP_002919.3Re-query CCDS DB by Nucleotide ID:NM_002928Re-query CCDS DB by Protein ID:NP_002919Link to BLAST:NP_002919.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002919.3 202 O15492 202 100% 0 0

Chromosomal Locations for CCDS 1348.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 182600292 182600513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182601966 182602132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182602420 182602484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182603229 182603339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182604216 182604259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGTGCCGCACCCTGGCCGCCTTCCCCACCACCTGCCTGGAGAGAGCCAAAGAGTTCAAGACACGTCTGG
GGATCTTTCTTCACAAATCAGAGCTGGGCTGCGATACTGGGAGTACTGGCAAGTTCGAGTGGGGCAGTAA
ACACAGCAAAGAGAATAGAAACTTCTCAGAAGATGTGCTGGGGTGGAGAGAGTCGTTCGACCTGCTGCTG
AGCAGTAAAAATGGAGTGGCTGCCTTCCACGCTTTCCTGAAGACAGAGTTCAGTGAGGAGAACCTGGAGT
TCTGGCTGGCCTGTGAGGAGTTCAAGAAGATCCGATCAGCTACCAAGCTGGCCTCCAGGGCACACCAGAT
CTTTGAGGAGTTCATTTGCAGTGAGGCCCCTAAAGAGGTCAACATTGACCATGAGACCCACGAGCTGACG
AGGATGAACCTGCAGACTGCCACAGCCACATGCTTTGATGCGGCTCAGGGGAAGACACGTACCCTGATGG
AGAAGGACTCCTACCCACGCTTCCTGAAGTCGCCTGCTTACCGGGACCTGGCTGCCCAAGCCTCAGCCGC
CTCTGCCACTCTGTCCAGCTGCAGCCTGGACGAGCCCTCACACACCTGA

Translation (202 aa):
MCRTLAAFPTTCLERAKEFKTRLGIFLHKSELGCDTGSTGKFEWGSKHSKENRNFSEDVLGWRESFDLLL
SSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICSEAPKEVNIDHETHELT
RMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDLAAQASAASATLSSCSLDEPSHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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