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Report for CCDS77940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77940.1 Public Homo sapiens 4 MEPE 24 110 108 CCDS HistoryNCBI Gene:56955Re-query CCDS DB by CCDS ID:77940.1Re-query CCDS DB by GeneID:56955See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395102.8 ENSP00000378534.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395102.8Link to Ensembl Protein Viewer:ENSP00000378534.4Re-query CCDS DB by Nucleotide ID:ENST00000395102Re-query CCDS DB by Protein ID:ENSP00000378534
Original member Current member NCBI NM_001291183.2 NP_001278112.1 Accepted alive Link to Nucleotide Sequence:NM_001291183.2Link to Protein Sequence:NP_001278112.1Re-query CCDS DB by Nucleotide ID:NM_001291183Re-query CCDS DB by Protein ID:NP_001278112Link to BLAST:NP_001278112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278112.1 556 Q9NQ76-2 556 100% 0 0

Chromosomal Locations for CCDS 77940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 87834715 87834768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87838632 87838685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87839685 87839777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87844977 87846446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGCGAGTTTTCTGTGTGGGACTACTCCTTTTCAGTGTGACCTGGGCAGCACCAACATTTCAACCACAGA
CTGAGAAAACTAAGCAAAGCTGTGTGGAAGAGCAGAGGATAACATACAAGGGTCACTATGAGAAACATGG
GCATTATGTTTTTAAGTGTGTTTACATGTCACCTGAGAAGAAAAATCAAACTGATGTAAAGCAGGAAGAA
AAAAACAAAGACAATATTGGTTTTCACCATTTGGGCAAGAGAATAAATCAAGAGCTATCATCTAAAGAAA
ATATTGTCCAGGAAAGAAAGAAAGATTTGTCCCTTTCTGAAGCCAGTGAGAATAAGGGAAGTAGTAAATC
TCAAAATTATTTCACAAATAGACAGAGACTGAATAAAGAATATAGTATCAGTAACAAAGAGAATACTCAC
AATGGCCTGAGGATGTCAATTTATCCTAAGTCAACTGGGAATAAAGGGTTTGAGGATGGAGATGATGCTA
TCAGCAAACTACATGACCAAGAAGAATATGGCGCAGCTCTCATCAGAAATAACATGCAACATATAATGGG
GCCAGTGACTGCGATTAAACTCCTGGGGGAAGAAAACAAAGAGAACACACCTAGGAATGTTCTAAACATA
ATCCCAGCAAGTATGAATTATGCTAAAGCACACTCGAAGGATAAAAAGAAGCCTCAAAGAGATTCCCAAG
CCCAGAAAAGTCCAGTAAAAAGCAAAAGCACCCATCGTATTCAACACAACATTGACTACCTAAAACATCT
CTCAAAAGTCAAAAAAATCCCCAGTGATTTTGAAGGCAGCGGTTATACAGATCTTCAAGAGAGAGGGGAC
AATGATATATCTCCTTTCAGTGGGGACGGCCAACCTTTTAAGGACATTCCTGGTAAAGGAGAAGCTACTG
GTCCTGACCTAGAAGGCAAAGATATTCAAACAGGGTTTGCAGGCCCAAGTGAAGCTGAGAGTACTCATCT
TGACACAAAAAAGCCAGGTTATAATGAGATCCCAGAGAGAGAAGAAAATGGTGGAAATACCATTGGAACT
AGGGATGAAACTGCGAAAGAGGCAGATGCTGTTGATGTCAGCCTTGTAGAGGGCAGCAACGATATCATGG
GTAGTACCAATTTTAAGGAGCTCCCTGGAAGAGAAGGAAACAGAGTGGATGCTGGCAGCCAAAATGCTCA
CCAAGGGAAGGTTGAGTTTCATTACCCTCCTGCACCCTCAAAAGAGAAAAGAAAAGAAGGCAGTAGTGAT
GCAGCTGAAAGTACCAACTATAATGAAATTCCTAAAAATGGCAAAGGCAGTACCAGAAAGGGTGTAGATC
ATTCTAATAGGAACCAAGCAACCTTAAATGAAAAACAAAGGTTTCCTAGTAAGGGCAAAAGTCAGGGCCT
GCCCATTCCTTCTCGTGGTCTTGATAATGAAATCAAAAACGAAATGGATTCCTTTAATGGCCCCAGTCAT
GAGAATATAATAACACATGGCAGAAAATATCATTATGTACCCCACAGACAAAATAATTCTACACGGAATA
AGGGTATGCCACAAGGGAAAGGCTCCTGGGGTAGACAACCCCATTCCAACAGGAGGTTTAGTTCCCGTAG
AAGGGATGACAGTAGTGAGTCATCTGACAGTGGCAGTTCAAGTGAGAGCGATGGTGACTAG

Translation (556 aa):
MRVFCVGLLLFSVTWAAPTFQPQTEKTKQSCVEEQRITYKGHYEKHGHYVFKCVYMSPEKKNQTDVKQEE
KNKDNIGFHHLGKRINQELSSKENIVQERKKDLSLSEASENKGSSKSQNYFTNRQRLNKEYSISNKENTH
NGLRMSIYPKSTGNKGFEDGDDAISKLHDQEEYGAALIRNNMQHIMGPVTAIKLLGEENKENTPRNVLNI
IPASMNYAKAHSKDKKKPQRDSQAQKSPVKSKSTHRIQHNIDYLKHLSKVKKIPSDFEGSGYTDLQERGD
NDISPFSGDGQPFKDIPGKGEATGPDLEGKDIQTGFAGPSEAESTHLDTKKPGYNEIPEREENGGNTIGT
RDETAKEADAVDVSLVEGSNDIMGSTNFKELPGREGNRVDAGSQNAHQGKVEFHYPPAPSKEKRKEGSSD
AAESTNYNEIPKNGKGSTRKGVDHSNRNQATLNEKQRFPSKGKSQGLPIPSRGLDNEIKNEMDSFNGPSH
ENIITHGRKYHYVPHRQNNSTRNKGMPQGKGSWGRQPHSNRRFSSRRRDDSSESSDSGSSSESDGD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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