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Report for CCDS51796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51796.1 Public Mus musculus 6 Herc6 23 108 98 CCDS HistoryNCBI Gene:67138Re-query CCDS DB by CCDS ID:51796.1Re-query CCDS DB by GeneID:67138See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031817.9 ENSMUSP00000031817.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031817.9Link to Ensembl Protein Viewer:ENSMUSP00000031817.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031817Re-query CCDS DB by Protein ID:ENSMUSP00000031817
Original member Current member NCBI NM_025992.2 NP_080268.1 Accepted alive Link to Nucleotide Sequence:NM_025992.2Link to Protein Sequence:NP_080268.1Re-query CCDS DB by Nucleotide ID:NM_025992Re-query CCDS DB by Protein ID:NP_080268Link to BLAST:NP_080268.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080268.1 1003 F2Z461 1003 100% 0 0

Chromosomal Locations for CCDS 51796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57581037 57581232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57583173 57583332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57584550 57584626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57598429 57598656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57599965 57600059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57604073 57604200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57607042 57607178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57607634 57607707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57610803 57610921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57611775 57611834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57618613 57618706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57619445 57619634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57625896 57626050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57646127 57646231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57647065 57647172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57652032 57652169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57654389 57654532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57658009 57658175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57659676 57659739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57660091 57660161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57662066 57662249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57662343 57662445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57662700 57662914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3012 nt):
ATGTATTTCAGCTGGGCTGCAGGAAGCCGGAAGCCTCGGCGCCTGAAGGCGGGAACCAGCGGCATTGAAC
TCTTGCAGGCAGCCAGCGGGGAACACCACTCGCTCCTACTGTTCAGCAACCACAGGGTGTATTCCTGCGG
GGACAACAGCTGGGGACAGCTGGGCCAGAGGAGAGACCAGAGTACCGAAAGGCCAGAACCAATTCAGGCA
CTGAATGATCTGCATGTTGACCTGGTGAGCTGTGGGAAGGAACACTCTGTGGCTGTCTGCCACAAAGGAA
AGGTCTTCGCTTGGGGAGCCGGTTCTGAAGGGCAGCTGGGGATTGGAGAATTTAAGGAAATAAGCTTTAT
GCCTACGAAAATAAAAGCTCTGGCTGGCATAAAAATAATCCAAGTTTCCTGTGGACACTACCACTCTTTG
GCCTTATCAGAAGATGGCCACGTGTTTTCATGGGGAAGGAACAGTGAAGGACAACTGGGCCTGGGGAAGA
ATTCCCGTTCTCAAGCTATTCCACAGAAGGTGAAGTCTCTGGAGGGGATCCCACTGGCTCAGGTTGCTGC
AGGTGGCACACACAGTTTTGCTCTGTCTCTCACGGGGACATCATTTGGCTGGGGGAGCAACAGATCTGGG
CAGTTGGCTCTCAGCGGGAACAAAGTTAAAGAACAAATCTACAAGCCGCATTCAATTGGTGCCCTGAAGA
ATCTGAGTGTGATTTATATTAGCTGTGGTTATGAGCATACTGCAGTGCTTACTGAGGAGGGACAAGTGTT
TACATTTGGAGGCAATAGCTCTGGACAACTACAGCCCAGCCCCAGGAGTGGACAAAGAGGCCCACAACTC
ATAGAAGGAATTGGTGGCCGTGTTTCACAGATAGAGTGCGCAAGTTATCACACCATTGCATATGTCTACA
CCACTGGTCAGGTGGTATCTTTAGGCCGTGGACCAAGTCACACAAGCAACCCAACTCATCAGGAGGCCCC
CGCAGAGAACTCTGATATTACCTGCCTGCTAGCTGCAGAGGACCTTGTGGATATTGAAGTCAAAGACATT
TTTGCTGGAGCACACGCCAACTTTGTGACAACTCGTCGGGTATCACATACTAGGTCTACAGGTGTTTCCA
TGAAAATCCTGCCAGAAATAATCCGAATCAACCAGTCTCTGGTAAAGAAATGGAGAGCAGCAAATAAAAG
AAAAGATCGTGAAGGCGCCAAAAGAGAAATCAGCTTGATATTTTCATCTTCTGCTTGTTTGACAGCGAGC
TTTCTGAAGAAAAGAGATGCTGGAGAGAATAATCTCATTGATGTGGACTTAAAACTGGCAAGAGATGTCT
TCAAGAAGTTAACAACAGAGAAATGGATTTCTTCTTTGATAACCACGTGTCTTGAGGAGTATCTGCTCAG
AGATCTTCCATACAGTTCTCCACACCAAGAAGCTCTACTTGTTTTTCTTTTGCTCCCAGAATGTTCCATT
ATGCAGGATCCTAAGAACTGGAAGACCCTGGCATTTGAATTTGCAAAAGCTATTCATAAAATGGGTCCAC
AGTCATTAGCATTCCTGAGAACGTGTTGGGCATCTTTGGAAGTTTCTTCACTGAACATACTGGTTCAGAT
GCTAAAGAAAGCCATCATCTCTCAAATACAGTATGGAGTTGCAACGGAGCAGTATATTACTAATATTAAA
GTTCTTTTAGAAGTGATAAAAGAAGTGCATAAGGCTAACTGTCAACTTCCAGAAAGTGCCTTCATCATAA
ATGAGCTTTCTGGCATCTTTAACTTTGATGCAGAGGCAGGAAGAATGTTCATACGGCATAACGATCTGGA
CTGTACAGAATCCTCAGATATGGTTGTTTTCAGTGATTTTCTATTTGTCTTTGATTTGCCATCCAAAATT
AAACTAATGAAATGTGACTCATTTGTAAAACTGATGTCTGAAGTCATGGCATTTCCAGAAAAGATGAGCT
CCCCACCATACCTTATACTGAAAGTCAGACGAAGTCACCTGGTGGAAGACACATTGCGTCAATTAAGACA
AGTGGAAGACTTTGACCTTAGGAAGCAACTATCGGTTGGATTTATTAATGAAATTCGTCCTGAGGCTGGG
GGAGTGAGTTCAGAGTTCTTCCACTGTATATTTGAAGAGATGACAGACCCCAAATATGAAATGTTCATAT
ATCCTGAAAAGGGTTCCAGCATGTGGTTTCCAGTCAATCCCAAGTTTGAGAAGAGCAGCTATTTCCTATT
TGGGATCTTATGTGGACTCTCCCTACATAACTTAAAGGTTATCAACCTTCCTTTCCCACTGGCTTTATAT
AAAAAACTTTTGAACCAAAAGCCATCTTTGGAAGACTTAAAAGAACTTAGTCTTCCCTTGGGGAGGAATT
TGCAAGAAGTTCTAAATTGTGAGGCTGGTGATATTGAAGAACTTCACATGTATTTTTCTATATACTGGGA
TCAAAAAGATGTTGATTTAATTCCAGATGGGATCTCTGTGCCTGTGAATGAAACCAACAAGAGAGACTAT
GTGTCTAAGTATGTTGATTACATTTTTAACATCTCTATAAAGACGATTTATGAAGAATTTCATAGAGGAT
TTTACAAAGTGTGTAACTGGGATATAATTAGGCAATTCCAGCCCGAAGAACTAATGACAGCAATAATTGG
AAATGCTACTTGTGACTGGAAACAATTTGAAAATAATTCAAAGTATAAAGATGGATATGACAAATCACAC
CCAACTATTCTGCTGTTTTGGAAGGCTTTCCATGACTTAACTTTGGATGAAAAGAAAAAATTCCTCTTGT
TTCTTACAGGATGTGATAGGCTGCATGTGAAAGGCCTACAGAATGAAGGAATAGTATTCCGGTGTTCTGA
AACCTTCAGTGAAGAAGATAACCCAAGATCATTGACATGTCACAGGATGCTAGACCTACCTAAGTATTCC
TCAATGCGAAGGATGAAGGAAGCACTTCAGGTTGCAATCAACAATAGCACGGGATTTGTCTCACAGGAAT
GA

Translation (1003 aa):
MYFSWAAGSRKPRRLKAGTSGIELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTERPEPIQA
LNDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSL
ALSEDGHVFSWGRNSEGQLGLGKNSRSQAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSG
QLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQLQPSPRSGQRGPQL
IEGIGGRVSQIECASYHTIAYVYTTGQVVSLGRGPSHTSNPTHQEAPAENSDITCLLAAEDLVDIEVKDI
FAGAHANFVTTRRVSHTRSTGVSMKILPEIIRINQSLVKKWRAANKRKDREGAKREISLIFSSSACLTAS
FLKKRDAGENNLIDVDLKLARDVFKKLTTEKWISSLITTCLEEYLLRDLPYSSPHQEALLVFLLLPECSI
MQDPKNWKTLAFEFAKAIHKMGPQSLAFLRTCWASLEVSSLNILVQMLKKAIISQIQYGVATEQYITNIK
VLLEVIKEVHKANCQLPESAFIINELSGIFNFDAEAGRMFIRHNDLDCTESSDMVVFSDFLFVFDLPSKI
KLMKCDSFVKLMSEVMAFPEKMSSPPYLILKVRRSHLVEDTLRQLRQVEDFDLRKQLSVGFINEIRPEAG
GVSSEFFHCIFEEMTDPKYEMFIYPEKGSSMWFPVNPKFEKSSYFLFGILCGLSLHNLKVINLPFPLALY
KKLLNQKPSLEDLKELSLPLGRNLQEVLNCEAGDIEELHMYFSIYWDQKDVDLIPDGISVPVNETNKRDY
VSKYVDYIFNISIKTIYEEFHRGFYKVCNWDIIRQFQPEELMTAIIGNATCDWKQFENNSKYKDGYDKSH
PTILLFWKAFHDLTLDEKKKFLLFLTGCDRLHVKGLQNEGIVFRCSETFSEEDNPRSLTCHRMLDLPKYS
SMRRMKEALQVAINNSTGFVSQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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