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Report for CCDS448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
448.1 Public Homo sapiens 1 RLF 24 110 108 CCDS HistoryNCBI Gene:6018Re-query CCDS DB by CCDS ID:448.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372771.5 ENSP00000361857.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372771.5Link to Ensembl Protein Viewer:ENSP00000361857.4Re-query CCDS DB by Nucleotide ID:ENST00000372771Re-query CCDS DB by Protein ID:ENSP00000361857
Original member Current member NCBI NM_012421.4 NP_036553.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012421.4Link to Protein Sequence:NP_036553.2Re-query CCDS DB by Nucleotide ID:NM_012421Re-query CCDS DB by Protein ID:NP_036553Link to BLAST:NP_036553.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036553.2 1914 Q13129 1914 100% 0 0

Chromosomal Locations for CCDS 448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40161400 40161636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40189055 40189209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40190772 40190853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40195632 40195764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40202412 40202614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40222574 40222710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40231517 40231658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40235792 40240447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5745 nt):
ATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAG
CCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTC
GGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCT
TTGAACTACTGCCGGAGCTTCTGCCAGACCTTATTGCAATATGCAAGCAACAAGAATGCATCAGAACATA
TTGTGTATCTTCTGGAGGTATATCGACTTGCCATCCAAAGCTTTGCCAGTGCACGTCCATACTTAACTAC
TGAATGTGAAGATGTCCTCTTAGTGCTTGGCAGATTAGTACTGAGTTGTTTCGAATTACTGCTTTCAGTG
TCTGAAAGTGAACTGCCATGTGAAGTCTGGCTACCATTCCTTCAGTCTCTACAGGAGTCACATGATGCAT
TATTGGAATTTGGGAATAATAACCTACAAATATTGGTTCATGTTACCAAGGAAGGGGTGTGGAAAAACCC
AGTTCTTCTTAAAATTCTGTCTCAACAGCCAGTAGAAACGGAGGAAGTCAATAAATTGATTGCACAAGAA
GGACCTTCCTTTCTGCAAATGCGAATAAAACATTTGTTGAAATCTAACTGCATCCCCCAGGCTACTGCTT
TATCAAAACTATGTGCAGAATCTAAAGAAATTTCAAATGTGTCATCTTTTCAGCAAGCCTATATCACATG
TTTATGTTCTATGCTCCCTAATGAAGATGCTATTAAGGAGATTGCAAAGGTCGACTGCAAGGAAGTACTA
GACATCATTTGTAATCTGGAATCTGAGGGGCAGGATAACACAGCATTTGTTCTTTGTACGACTTACCTTA
CCCAGCAGCTCCAAACTGCAAGTGTATATTGTTCTTGGGAACTGACTCTTTTTTGGAGTAAACTGCAAAG
AAGAATTGACCCTTCTTTAGATACTTTTTTGGAGCGCTGTCGTCAGTTTGGTGTCATAGCTAAAACGCAG
CAGCATTTATTTTGCCTCATTAGAGTTATACAAACTGAAGCACAAGATGCTGGTCTTGGGGTGTCAATTT
TACTGTGTGTCAGAGCTCTTCAACTCAGATCAAGTGAAGATGAGGAAATGAAGGCATCAGTTTGTAAAAC
AATTGCCTGTCTTTTACCAGAAGATTTAGAAGTTAGACGAGCCTGTCAGCTTACAGAATTCTTAATTGAA
CCCAGTTTGGATGGATTTAATATGTTAGAAGAACTATATTTGCAACCAGATCAAAAATTTGATGAAGAAA
ATGCACCGGTTCCAAATTCTCTTCGATGTGAGCTCTTACTAGCTTTAAAAGCCCACTGGCCTTTTGATCC
TGAGTTTTGGGACTGGAAAACTTTAAAACGACACTGCCACCAACTTTTAGGACAAGAAGCCTCAGATTCT
GATGATGATTTAAGTGGCTATGAAATGTCCATTAATGACACAGATGTTTTAGAGTCATTTCTCAGTGACT
ATGATGAGGGTAAAGAAGATAAACAATATAGAAGAAGAGATTTGACAGATCAGCATAAGGAGAAAAGAGA
CAAAAAACCTATTGGCTCTTCTGAAAGATATCAGAGGTGGCTTCAGTACAAGTTTTTCTGTTTGTTATGT
AAGCGGGAATGTATAGAGGCTAGAATTCTTCATCATTCTAAGATGCATATGGAAGATGGAATTTACACCT
GTCCAGTTTGTATTAAAAAATTTAAGAGAAAAGAAATGTTTGTTCCTCATGTGATGGAGCATGTTAAAAT
GCCACCAAGCAGAAGGGACCGCTCTAAAAAGAAATTACTGTTAAAAGGCTCTCAAAAGGGTATTTGTCCT
AAGAGCCCCTCTGCAATCCCAGAGCAAAACCATTCATTGAATGACCAAGCCAAAGGAGAGTCTCATGAAT
ATGTCACATTCAGCAAATTAGAAGATTGCCACCTGCAAGACAGAGATTTGTATCCATGTCCCGGTACAGA
CTGTTCCCGTGTGTTTAAGCAATTTAAATACTTAAGTGTGCATCTTAAAGCTGAACACCAAAATAATGAT
GAAAATGCCAAGCACTACTTGGATATGAAAAATAGAAGAGAGAAGTGTACTTACTGTCGACGACATTTTA
TGTCTGCTTTTCACCTTCGAGAGCACGAACAAGTGCATTGTGGGCCTCAGCCTTATATGTGTGTATCTAT
AGATTGCTATGCTAGGTTTGGATCAGTAAATGAACTACTTAACCATAAACAAAAGCATGACGATCTGCGT
TACAAATGTGAATTAAATGGCTGTAATATTGTTTTCAGTGACTTGGGACAGCTTTACCACCATGAAGCAC
AACACTTTAGGGATGCATCTTACACATGCAACTTCCTTGGCTGTAAAAAGTTCTATTACTCCAAAATTGA
ATACCAGAATCACCTCTCAATGCATAATGTTGAAAATTCAAATGGAGACATAAAGAAATCAGTGAAACTT
GAGGAGTCTGCAACAGGTGAAAAGCAAGATTGTATTAATCAGCCCCATCTACTTAACCAAACTGATAAAT
CACATTTACCTGAAGATCTTTTCTGTGCAGAATCAGCTAATTCTCAAATAGATACAGAAACTGCAGAAAA
CCTGAAAGAAAACAGTGACAGTAATTCTAGTGATCAGTTAAGTCATAGCTCTTCAGCTTCAATGAATGAA
GAGCTAATTGACACACTAGATCACTCTGAAACTATGCAGGATGTATTGTTATCTAATGAGAAAGTCTTTG
GGCCCTCCAGTTTAAAAGAAAAATGTTCCAGTATGGCAGTTTGTTTTGACGGGACTAAGTTTACCTGTGG
TTTTGATGGCTGTGGTTCCACATACAAAAATGCAAGAGGAATGCAGAAACATTTACGGAAGGTTCATCCA
TACCATTTCAAGCCCAAAAAGATAAAGACGAAAGATCTGTTTCCCTCTTTGGGTAATGAACATAATCAGA
CAACTGAAAAGTTGGATGCAGAACCTAAACCCTGCTCAGATACAAACAGTGACTCCCCAGATGAAGGTCT
AGATCACAATATTCACATTAAATGTAAACGAGAACATCAAGGTTATTCCTCAGAATCCTCCATTTGTGCT
TCTAAAAGGCCCTGTACAGAGGATACCATGTTGGAACTTCTGTTACGCTTGAAACATTTAAGCTTGAAAA
ACTCAATAACACATGGATCTTTCTCAGGGTCATTGCAGGGGTACCCATCCAGTGGTGCTAAGTCTCTTCA
GTCAGTTTCATCTATCTCAGACCTTAATTTTCAGAATCAAGATGAAAACATGCCAAGTCAGTACCTTGCA
CAGTTGGCGGCTAAGCCGTTTTTCTGTGAGCTTCAAGGATGCAAATATGAATTTGTGACCAGAGAGGCTC
TGTTAATGCATTATCTTAAAAAGCATAATTATTCAAAAGAAAAAGTCCTTCAGTTAACCATGTTCCAACA
TCGGTATTCCCCATTTCAGTGTCATATTTGCCAAAGGTCATTTACAAGAAAAACACACCTTAGGATTCAT
TATAAAAATAAACATCAAATTGGCAGTGACAGAGCAACTCACAAACTATTAGATAATGAAAAGTGTGATC
ATGAAGGCCCATGTTCAGTAGATAGGTTGAAAGGTGATTGTTCTGCAGAACTTGGAGGTGATCCCAGTAG
TAACTCTGAGAAACCACACTGTCATCCTAAAAAGGATGAATGTAGTTCTGAAACAGATTTGGAATCATCT
TGTGAAGAAACAGAAAGTAAAACATCTGACATTTCATCACCAATAGGCAGCCATAGAGAAGAACAAGAAG
GAAGAGAGGGCAGAGGTAGCAGGCGAACTGTTGCTAAAGGAAATCTGTGTTATATTTTGAATAAATACCA
CAAACCATTCCATTGTATTCATAAAACTTGCAACTCCTCATTCACCAATCTAAAAGGCTTAATTCGCCAT
TACAGAACTGTACATCAGTACAACAAAGAACAGTTATGTTTGGAGAAAGACAAAGCAAGAACCAAAAGGG
AACTTGTCAAATGTAAAAAGATATTTGCTTGCAAATATAAGGAATGTAATAAACGCTTCCTGTGTTCCAA
AGCTCTTGCTAAGCACTGTAGTGATTCTCATAACCTAGACCATATTGAAGAGCCTAAAGTACTTTCCGAA
GCTGGATCTGCAGCAAGGTTTTCTTGTAACCAGCCTCAGTGCCCTGCTGTTTTTTATACATTCAACAAGT
TGAAGCACCACTTGATGGAACAGCATAATATTGAAGGGGAAATACATTCAGATTATGAAATTCATTGTGA
TCTTAATGGCTGTGGCCAGATTTTCACCCATCGCAGTAATTACTCACAACATGTATATTACCGACATAAA
GACTATTATGATGATTTGTTTAGAAGCCAGAAAGTAGCAAATGAGAGACTACTAAGGAGTGAAAAGGTAT
GTCAAACAGCTGATACTCAGGGGCATGAACATCAGACCACCAGGAGATCATTTAATGCTAAGTCTAAAAA
ATGTGGCTTAATCAAAGAAAAGAAAGCCCCAATAAGTTTTAAAACCAGAGCTGAGGCCCTCCATATGTGT
GTGGAGCACTCTGAGCACACACAGTACCCCTGCATGGTTCAAGGATGCTTATCTGTGGTGAAGTTGGAGA
GCAGCATTGTGAGGCATTACAAACGCACTCATCAGATGAGTAGTGCCTATTTAGAGCAACAGATGGAGAA
TCTTGTTGTTTGCGTTAAGTACGGTACCAAAATTAAGGAGGAACCCCCTTCTGAAGCAGATCCCTGTATA
AAGAAAGAAGAAAATAGAAGCTGTGAATCAGAGCGCACAGAACACAGCCATTCCCCGGGTGACAGTAGTG
CACCCATCCAGAACACTGATTGCTGTCATTCAAGTGAAAGGGATGGAGGTCAGAAAGGGTGCATAGAAAG
CAGCTCAGTATTTGATGCAGATACTCTGCTCTACAGGGGAACTTTGAAATGTAATCATAGTTCCAAAACC
ACTTCCCTAGAACAGTGTAATATAGTTCAGCCTCCTCCTCCTTGTAAAATAGAAAATTCCATACCTAATC
CCAATGGGACTGAAAGTGGGACTTATTTCACAAGTTTCCAGCTGCCTTTACCAAGGATCAAAGAATCAGA
AACTAGGCAGCATAGTTCAGGGCAAGAAAACACTGTAAAAAATCCAACCCATGTCCCAAAAGAGAATTTT
AGGAAACATTCACAGCCCCGGTCATTTGATTTGAAGACTTACAAACCTATGGGATTTGAATCTTCATTTC
TGAAATTTATTCAGGAAAGTGAAGAGAAAGAAGATGATTTTGATGATTGGGAGCCTTCAGAGCACTTAAC
ATTAAGTAATTCTTCACAGTCCAGTAATGATTTAACAGGGAATGTTGTGGCAAATAATATGGTGAATGAC
AGTGAACCTGAAGTTGACATACCTCATTCTTCCAGTGACTCTACAATTCATGAGAACCTGACTGCAATCC
CACCTTTAATAGTAGCTGAAACAACAACAGTTCCTTCCTTGGAAAACCTGAGGGTTGTATTGGACAAAGC
ATTAACAGACTGTGGAGAGCTTGCCTTAAAACAGCTTCATTATCTTCGGCCAGTGGTGGTTCTTGAAAGA
TCTAAGTTTTCCACACCAATTTTAGACTTATTTCCAACAAAAAAGACAGATGAGCTTTGTGTAGGAAGTT
CATAA

Translation (1914 aa):
MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSS
LNYCRSFCQTLLQYASNKNASEHIVYLLEVYRLAIQSFASARPYLTTECEDVLLVLGRLVLSCFELLLSV
SESELPCEVWLPFLQSLQESHDALLEFGNNNLQILVHVTKEGVWKNPVLLKILSQQPVETEEVNKLIAQE
GPSFLQMRIKHLLKSNCIPQATALSKLCAESKEISNVSSFQQAYITCLCSMLPNEDAIKEIAKVDCKEVL
DIICNLESEGQDNTAFVLCTTYLTQQLQTASVYCSWELTLFWSKLQRRIDPSLDTFLERCRQFGVIAKTQ
QHLFCLIRVIQTEAQDAGLGVSILLCVRALQLRSSEDEEMKASVCKTIACLLPEDLEVRRACQLTEFLIE
PSLDGFNMLEELYLQPDQKFDEENAPVPNSLRCELLLALKAHWPFDPEFWDWKTLKRHCHQLLGQEASDS
DDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYRRRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLC
KRECIEARILHHSKMHMEDGIYTCPVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICP
KSPSAIPEQNHSLNDQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSVHLKAEHQNND
ENAKHYLDMKNRREKCTYCRRHFMSAFHLREHEQVHCGPQPYMCVSIDCYARFGSVNELLNHKQKHDDLR
YKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNFLGCKKFYYSKIEYQNHLSMHNVENSNGDIKKSVKL
EESATGEKQDCINQPHLLNQTDKSHLPEDLFCAESANSQIDTETAENLKENSDSNSSDQLSHSSSASMNE
ELIDTLDHSETMQDVLLSNEKVFGPSSLKEKCSSMAVCFDGTKFTCGFDGCGSTYKNARGMQKHLRKVHP
YHFKPKKIKTKDLFPSLGNEHNQTTEKLDAEPKPCSDTNSDSPDEGLDHNIHIKCKREHQGYSSESSICA
SKRPCTEDTMLELLLRLKHLSLKNSITHGSFSGSLQGYPSSGAKSLQSVSSISDLNFQNQDENMPSQYLA
QLAAKPFFCELQGCKYEFVTREALLMHYLKKHNYSKEKVLQLTMFQHRYSPFQCHICQRSFTRKTHLRIH
YKNKHQIGSDRATHKLLDNEKCDHEGPCSVDRLKGDCSAELGGDPSSNSEKPHCHPKKDECSSETDLESS
CEETESKTSDISSPIGSHREEQEGREGRGSRRTVAKGNLCYILNKYHKPFHCIHKTCNSSFTNLKGLIRH
YRTVHQYNKEQLCLEKDKARTKRELVKCKKIFACKYKECNKRFLCSKALAKHCSDSHNLDHIEEPKVLSE
AGSAARFSCNQPQCPAVFYTFNKLKHHLMEQHNIEGEIHSDYEIHCDLNGCGQIFTHRSNYSQHVYYRHK
DYYDDLFRSQKVANERLLRSEKVCQTADTQGHEHQTTRRSFNAKSKKCGLIKEKKAPISFKTRAEALHMC
VEHSEHTQYPCMVQGCLSVVKLESSIVRHYKRTHQMSSAYLEQQMENLVVCVKYGTKIKEEPPSEADPCI
KKEENRSCESERTEHSHSPGDSSAPIQNTDCCHSSERDGGQKGCIESSSVFDADTLLYRGTLKCNHSSKT
TSLEQCNIVQPPPPCKIENSIPNPNGTESGTYFTSFQLPLPRIKESETRQHSSGQENTVKNPTHVPKENF
RKHSQPRSFDLKTYKPMGFESSFLKFIQESEEKEDDFDDWEPSEHLTLSNSSQSSNDLTGNVVANNMVND
SEPEVDIPHSSSDSTIHENLTAIPPLIVAETTTVPSLENLRVVLDKALTDCGELALKQLHYLRPVVVLER
SKFSTPILDLFPTKKTDELCVGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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