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Report for CCDS19313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19313.1 Public Mus musculus 5 Rbm47 23 108 98 CCDS HistoryNCBI Gene:245945Re-query CCDS DB by CCDS ID:19313.1Re-query CCDS DB by GeneID:245945See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094757.8 ENSMUSP00000092349.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094757.8Link to Ensembl Protein Viewer:ENSMUSP00000092349.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000094757Re-query CCDS DB by Protein ID:ENSMUSP00000092349
Original member Current member EBI ENSMUST00000113724.5 ENSMUSP00000109353.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113724.5Link to Ensembl Protein Viewer:ENSMUSP00000109353.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113724Re-query CCDS DB by Protein ID:ENSMUSP00000109353
Original member Current member EBI ENSMUST00000113726.7 ENSMUSP00000109355.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113726.7Link to Ensembl Protein Viewer:ENSMUSP00000109355.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113726Re-query CCDS DB by Protein ID:ENSMUSP00000109355
Original member Current member EBI ENSMUST00000167950.7 ENSMUSP00000128016.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167950.7Link to Ensembl Protein Viewer:ENSMUSP00000128016.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167950Re-query CCDS DB by Protein ID:ENSMUSP00000128016
Original member Current member EBI ENSMUST00000201544.3 ENSMUSP00000144122.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201544.3Link to Ensembl Protein Viewer:ENSMUSP00000144122.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201544Re-query CCDS DB by Protein ID:ENSMUSP00000144122
Original member Current member EBI ENSMUST00000200775.3 ENSMUSP00000144325.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200775.3Link to Ensembl Protein Viewer:ENSMUSP00000144325.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200775Re-query CCDS DB by Protein ID:ENSMUSP00000144325
Original member Current member NCBI NM_001127382.2 NP_001120854.1 Accepted alive Link to Nucleotide Sequence:NM_001127382.2Link to Protein Sequence:NP_001120854.1Re-query CCDS DB by Nucleotide ID:NM_001127382Re-query CCDS DB by Protein ID:NP_001120854Link to BLAST:NP_001120854.1
Original member Current member NCBI NM_139065.3 NP_620704.1 Accepted alive Link to Nucleotide Sequence:NM_139065.3Link to Protein Sequence:NP_620704.1Re-query CCDS DB by Nucleotide ID:NM_139065Re-query CCDS DB by Protein ID:NP_620704Link to BLAST:NP_620704.1
Original member Current member NCBI NM_178446.4 NP_848541.2 Accepted alive Link to Nucleotide Sequence:NM_178446.4Link to Protein Sequence:NP_848541.2Re-query CCDS DB by Nucleotide ID:NM_178446Re-query CCDS DB by Protein ID:NP_848541Link to BLAST:NP_848541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120854.1 590 Q91WT8-1 590 100% 0 0
NP_620704.1 590 Q91WT8-1 590 100% 0 0
NP_848541.2 590 Q91WT8-1 590 100% 0 0

Chromosomal Locations for CCDS 19313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 66019206 66019436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66022628 66022833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66024953 66025159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66026130 66027258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGACTGCTGAAGATTCCGCCACAGCCATGAACAGCGATCCAACAGTGGGGTCCTCCACCAAGGTACCGG
AGGGTGTGGCGGGCGCGCCCAATGAGGCTGCACTGTTGGCACTGATAGAGCGCACCGGCTACACCATGGT
ACAAGAGAACGGGCAGCGCAAGTACGGTGGACCCCCGCCCGGCTGGGAGGGCCCGCATCCCCAGCGTGGC
TGTGAGGTCTTCGTGGGCAAGATCCCACGTGACGTGTATGAAGATGAGCTGGTGCCTGTGTTTGAGACCG
TAGGTCGCATCTATGAGCTGCGACTCATGATGGATTTCGATGGCAAGAACCGCGGCTATGCCTTCGTGAT
GTACTGCCACAAGCATGAGGCCAAGCGAGCCGTTCGGGAACTCAACAACTACGAGATCCGCCCCGGCCGT
CTGCTGGGTGTGTGCTGTAGTGTGGACAACTGCCGCCTCTTCATTGGTGGCATCCCCAAGATGAAGAAGC
GCGGGGAGATCCTGGAGGAGATCGCCAAGGTCACCGAGGGCGTACTCAACGTGATTGTGTATGCCAGTGC
GGCAGACAAGATGAAAAACCGAGGCTTCGCCTTTGTGGAGTATGAGAGCCATCGTGCTGCAGCCATGGCA
CGCCGCAAGCTCATGCCGGGTCGGATCCAACTGTGGGGCCACCAGATTGCTGTGGACTGGGCCGAGCCAG
AGATTGACGTGGACGAAGATGTGATGCAGACAGTGAAGATCCTCTACGTGCGCAACCTCATGATCGAGAC
CACCGAGGAGACCATCAAGAAGAGCTTTGGCCAGTTCAACCCAGGCTGCGTGGAAAGGGTCAAGAAGATC
CGTGACTACGCCTTCGTGCACTTCACTAGCCGTGAGGATGCTGTGCATGCTATGAACAACCTCAACGGCA
CAGAGCTGGAGGGATCCTGCTTAGAAGTCACGCTGGCCAAGCCCGTGGACAAGGAACAGTACTCCCGCTA
CCAGAAGGCAGCCAAGGGTGGTGGTGGCTCGGCTGAGGCCGTAGCGCAGCAACCCAGCTACGTGTACTCC
TGTGACCCCTACACGTTGGCCTACTACGGCTACCCCTACAACGCTCTCATCGGGCCCAACCGGGACTACT
TCGTGAAAACAGGCAGCATAAGAGGCCGAGGGAGAGGCGCAGCTGGAAACAGGACCCCAGGGCCCAGGGG
TTCCTACCTCGGAGGATATTCCGCTGGCCGTGGTATATATAGCCGATATCACGAAGGCAAAGGCAAACAG
CAGGAGAAAGGATATGAACTTGTGCCGAATTTGGAGATCTCTCCTGTCAATCCAGTTGCCATTAAACCTG
GCACAGTGGCCATCCCTGCCATCGGTGCTCAGTACTCCATGTTCCAGGCAGCCCCAGCCCCGAAAATAAT
CGAAGATGGCAAGATCCACACAATGGAACACATGATCAGCCCCATTGCGGTGCAGCCTGACCCCGCCACT
GCTGCTGCCGCTGCAGCCGCTGCAGCCGCTGCTGCCGTCATTCCTGCGGTATCCACACCGCCACCTTTCC
AGGGCCGTCCAATAACTCCTGTGTACACCGTGGCACCAAATGTTCAGAGAATCCCCACCGCCGGCATCTA
CGGGGCCAGCTACGTCCCCTTTGCTGCTCCCGCCACTGCCACAATCGCCACACTACAGAAGAACGCCGCG
GCTGCCGTGTATGGGGGCTACGCCGGCTACATACCTCAGGCCTTCCCCGCTGCTCTCCAGGTGCCCATCC
ACGACGTCTACCAGACTTACTGA

Translation (590 aa):
MTAEDSATAMNSDPTVGSSTKVPEGVAGAPNEAALLALIERTGYTMVQENGQRKYGGPPPGWEGPHPQRG
CEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGR
LLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMA
RRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKI
RDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS
CDPYTLAYYGYPYNALIGPNRDYFVKTGSIRGRGRGAAGNRTPGPRGSYLGGYSAGRGIYSRYHEGKGKQ
QEKGYELVPNLEISPVNPVAIKPGTVAIPAIGAQYSMFQAAPAPKIIEDGKIHTMEHMISPIAVQPDPAT
AAAAAAAAAAAAVIPAVSTPPPFQGRPITPVYTVAPNVQRIPTAGIYGASYVPFAAPATATIATLQKNAA
AAVYGGYAGYIPQAFPAALQVPIHDVYQTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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