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Report for CCDS7470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7470.1 Public Homo sapiens 10 AVPI1 24 110 108 CCDS HistoryNCBI Gene:60370Re-query CCDS DB by CCDS ID:7470.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370626.4 ENSP00000359660.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370626.4Link to Ensembl Protein Viewer:ENSP00000359660.3Re-query CCDS DB by Nucleotide ID:ENST00000370626Re-query CCDS DB by Protein ID:ENSP00000359660
Original member Current member NCBI NM_021732.3 NP_068378.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021732.3Link to Protein Sequence:NP_068378.2Re-query CCDS DB by Nucleotide ID:NM_021732Re-query CCDS DB by Protein ID:NP_068378Link to BLAST:NP_068378.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068378.2 147 Q5T686 147 100% 0 0

Chromosomal Locations for CCDS 7470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 97677869 97678025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97679619 97679905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGGTACCCCAGCCTCGGTGGTCAGTGAGCCACCCCCTTGGCAGGCCCCGATTGAGGCCCGGGGCCGCA
AGCAGGCCTCGGCCAACATCTTCCAGGACGCCGAGCTGCTGCAGATCCAAGCCCTGTTTCAACGCAGCGG
GGACCAGCTGGCCGAGGAACGGGCACAGATCATCTGGGAATGTGCAGGGGACCACCGTGTGGCTGAGGCC
CTCAAGAGGCTGCGCAGGAAGAGGCCCCCAAGGCAGAAACCCCTGGGCCACTCGCTACACCACTGCAGCC
GCCTCAGAATCCTGGAGCCCCACTCTGCACTGGCCAACCCACAGAGTGCCACAGAGACAGCCTCCAGTGA
GCAGTATCTGCACTCTAGGAAGAAAAGTGCCAGGATCCGCCGGAACTGGAGGAAGTCAGGCCCCACAAGC
TACCTCCACCAGATCAGACACTGA

Translation (147 aa):
MGTPASVVSEPPPWQAPIEARGRKQASANIFQDAELLQIQALFQRSGDQLAEERAQIIWECAGDHRVAEA
LKRLRRKRPPRQKPLGHSLHHCSRLRILEPHSALANPQSATETASSEQYLHSRKKSARIRRNWRKSGPTS
YLHQIRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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