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Report for CCDS12780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12780.1 Public Homo sapiens 19 TSKS 24 110 108 CCDS HistoryNCBI Gene:60385Re-query CCDS DB by CCDS ID:12780.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246801.8 ENSP00000246801.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246801.8Link to Ensembl Protein Viewer:ENSP00000246801.2Re-query CCDS DB by Nucleotide ID:ENST00000246801Re-query CCDS DB by Protein ID:ENSP00000246801
Original member Current member NCBI NM_021733.2 NP_068379.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021733.2Link to Protein Sequence:NP_068379.1Re-query CCDS DB by Nucleotide ID:NM_021733Re-query CCDS DB by Protein ID:NP_068379Link to BLAST:NP_068379.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068379.1 592 Q9UJT2-1 592 100% 0 0

Chromosomal Locations for CCDS 12780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49739776 49739932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49740059 49740183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49741885 49742020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49744231 49744404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49745202 49745396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49746470 49746798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49747389 49747472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49748085 49748168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49748374 49748469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49762004 49762232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49763078 49763247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGCGAGCGTGGTGGTGAAGACGATCTGGCAGTCCAAAGAGATCCATGAGGCCGGGGACACCCCCACGG
GGGTGGAGAGCTGCTCCCAGCTAGTCCCAGAGGCTCCCCGGAGGGTGACCAGCCGGGCCAAGGGGATCCC
GAAGAAAAAGAAGGCCGTGTCGTTCCACGGGGTGGAGCCCCAGATGTCCCATCAGCCCATGCACTGGTGC
CTGAACCTCAAACGGTCCTCGGCCTGCACCAACGTGTCACTGCTCAACCTGGCCGCCATGGAGCCCACTG
ACTCCACGGGGACAGACTCCACAGTGGAAGACCTCAGCGGCCAACTCACACTGGCTGGGCCCCCTGCCTC
CCCTACCCTACCCTGGGATCCGGATGACGCAGACATCACGGAAATCCTGAGTGGGGTCAACAGTGGATTG
GTCCGCGCCAAAGACTCCATCACCAGCTTGAAGGAAAAGACCAACCGGGTTAACCAGCACGTGCAGTCTC
TGCAGAGCGAGTGTTCTGTGCTGAGCGAGAATCTGGAGAGAAGGCGGCAAGAGGCAGAAGAGTTGGAGGG
GTACTGCATTCAACTCAAGGAGAACTGCTGGAAGGTGACCCGGTCTGTGGAAGATGCTGAAATCAAAACC
AACGTCTTGAAGCAGAATTCTGCCCTGCTGGAGGAGAAGCTGCGCTACCTCCAGCAGCAGCTGCAGGATG
AGACGCCGCGACGGCAGGAGGCCGAGCTGCAGGAGCCGGAGGAGAAGCAGGAGCCGGAGGAGAAGCAGGA
GCCGGAGGAGAAGCAGAAGCCGGAGGCTGGCCTCTCCTGGAACAGCCTGGGCCCCGCCGCCACGTCCCAG
GGCTGCCCCGGCCCGCCAGGGAGTCCCGACAAACCCTCGCGGCCACACGGCCTGGTCCCCGCAGGCTGGG
GAATGGGGCCTCGGGCTGGCGAGGGCCCCTACGTGAGCGAGCAGGAATTGCAGAAGCTGTTCACCGGCAT
CGAAGAGCTGAGGAGAGAGGTGTCCTCACTGACCGCCCGGTGGCATCAGGAGGAGGGGGCGGTGCAGGAA
GCCCTGCGGCTGCTCGGGGGCCTGGGCGGCAGGGTCGACGGCTTCCTAGGCCAGTGGGAGCGGGCACAGC
GCGAACAGGCACAGACGGCGCGGGACTTGCAGGAGCTGCGAGGTCGGGCGGATGAGCTGTGCACCATGGT
GGAGCGGTCAGCAGTGTCTGTGGCTTCACTGAGGAGCGAACTGGAGGGGCTGGGCCCACTGAAACCCATT
CTGGAGGAGTTCGGGCGGCAATTTCAGAACTCTCGAAGAGGGCCTGACCTCTCCATGAACCTGGATCGGT
CCCACCAAGGCAACTGTGCCCGCTGTGCCAGCCAGGGGTCGCAGTTGTCTACGGAGTCCCTGCAGCAGCT
GCTGGACCGAGCACTGACCTCACTAGTGGACGAGGTGAAGCAGAGGGGCCTGACTCCTGCCTGTCCCAGC
TGTCAGAGGCTACACAAGAAGATTCTGGAGCTGGAGCGCCAGGCCTTAGCCAAACACGTCAGGGCAGAGG
CCCTGAGCTCCACCCTTCGGCTGGCCCAAGACGAGGCCCTGCGGGCCAAGAACCTACTGCTGACAGACAA
GATGAAGCCAGAGGAGAAGATGGCCACTCTGGACCATCTACACTTGAAGATGTGCTCCCTCCACGATCAT
CTCAGCAACCTGCCACTTGAGGGGTCCACGGGAACAATGGGGGGAGGCAGCAGTGCAGGAACCCCCCCAA
AACAGGGGGGCTCAGCCCCTGAACAATAA

Translation (592 aa):
MASVVVKTIWQSKEIHEAGDTPTGVESCSQLVPEAPRRVTSRAKGIPKKKKAVSFHGVEPQMSHQPMHWC
LNLKRSSACTNVSLLNLAAMEPTDSTGTDSTVEDLSGQLTLAGPPASPTLPWDPDDADITEILSGVNSGL
VRAKDSITSLKEKTNRVNQHVQSLQSECSVLSENLERRRQEAEELEGYCIQLKENCWKVTRSVEDAEIKT
NVLKQNSALLEEKLRYLQQQLQDETPRRQEAELQEPEEKQEPEEKQEPEEKQKPEAGLSWNSLGPAATSQ
GCPGPPGSPDKPSRPHGLVPAGWGMGPRAGEGPYVSEQELQKLFTGIEELRREVSSLTARWHQEEGAVQE
ALRLLGGLGGRVDGFLGQWERAQREQAQTARDLQELRGRADELCTMVERSAVSVASLRSELEGLGPLKPI
LEEFGRQFQNSRRGPDLSMNLDRSHQGNCARCASQGSQLSTESLQQLLDRALTSLVDEVKQRGLTPACPS
CQRLHKKILELERQALAKHVRAEALSSTLRLAQDEALRAKNLLLTDKMKPEEKMATLDHLHLKMCSLHDH
LSNLPLEGSTGTMGGGSSAGTPPKQGGSAPEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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