NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13984.1 Public Homo sapiens 22 APOBEC3G 24 110 108 CCDS HistoryNCBI Gene:60489Re-query CCDS DB by CCDS ID:13984.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13984.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407997.4 ENSP00000385057.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407997.4Link to Ensembl Protein Viewer:ENSP00000385057.3Re-query CCDS DB by Nucleotide ID:ENST00000407997Re-query CCDS DB by Protein ID:ENSP00000385057
Original member Current member NCBI NM_021822.4 NP_068594.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021822.4Link to Protein Sequence:NP_068594.1Re-query CCDS DB by Nucleotide ID:NM_021822Re-query CCDS DB by Protein ID:NP_068594Link to BLAST:NP_068594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068594.1 384 Q9HC16-1 384 100% 0 0

Chromosomal Locations for CCDS 13984.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 39077362 39077378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39078932 39079085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39080933 39081227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39081471 39081585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39083731 39083884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39086279 39086567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39087011 39087126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39087407 39087421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGAAGCCTCACTTCAGAAACACAGTGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATA
GACCCATCCTTTCTCGTCGGAATACCGTCTGGCTGTGCTACGAAGTGAAAACAAAGGGTCCCTCAAGGCC
CCCTTTGGACGCAAAGATCTTTCGAGGCCAGGTGTATTCCGAACTTAAGTACCACCCAGAGATGAGATTC
TTCCACTGGTTCAGCAAGTGGAGGAAGCTGCATCGTGACCAGGAGTATGAGGTCACCTGGTACATATCCT
GGAGCCCCTGCACAAAGTGTACAAGGGATATGGCCACGTTCCTGGCCGAGGACCCGAAGGTTACCCTGAC
CATCTTTGTTGCCCGCCTCTACTACTTCTGGGACCCAGATTACCAGGAGGCGCTTCGCAGCCTGTGTCAG
AAAAGAGACGGTCCGCGTGCCACCATGAAGATCATGAATTATGACGAATTTCAGCACTGTTGGAGCAAGT
TCGTGTACAGCCAAAGAGAGCTATTTGAGCCTTGGAATAATCTGCCTAAATATTATATATTACTGCACAT
CATGCTGGGGGAGATTCTCAGACACTCGATGGATCCACCCACATTCACTTTCAACTTTAACAATGAACCT
TGGGTCAGAGGACGGCATGAGACTTACCTGTGTTATGAGGTGGAGCGCATGCACAATGACACCTGGGTCC
TGCTGAACCAGCGCAGGGGCTTTCTATGCAACCAGGCTCCACATAAACACGGTTTCCTTGAAGGCCGCCA
TGCAGAGCTGTGCTTCCTGGACGTGATTCCCTTTTGGAAGCTGGACCTGGACCAGGACTACAGGGTTACC
TGCTTCACCTCCTGGAGCCCCTGCTTCAGCTGTGCCCAGGAAATGGCTAAATTCATTTCAAAAAACAAAC
ACGTGAGCCTGTGCATCTTCACTGCCCGCATCTATGATGATCAAGGAAGATGTCAGGAGGGGCTGCGCAC
CCTGGCCGAGGCTGGGGCCAAAATTTCAATAATGACATACAGTGAATTTAAGCACTGCTGGGACACCTTT
GTGGACCACCAGGGATGTCCCTTCCAGCCCTGGGATGGACTAGATGAGCACAGCCAAGACCTGAGTGGGA
GGCTGCGGGCCATTCTCCAGAATCAGGAAAACTGA

Translation (384 aa):
MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKYHPEMRF
FHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQ
KRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEP
WVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVT
CFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTF
VDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH