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Report for CCDS76105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76105.1 Public Homo sapiens 1 HNRNPCL2 24 110 108 CCDS HistoryNCBI Gene:440563Re-query CCDS DB by CCDS ID:76105.1Re-query CCDS DB by GeneID:440563See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76105.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621994.3 ENSP00000479203.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621994.3Link to Ensembl Protein Viewer:ENSP00000479203.2Re-query CCDS DB by Nucleotide ID:ENST00000621994Re-query CCDS DB by Protein ID:ENSP00000479203
Original member Current member NCBI NM_001136561.3 NP_001130033.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136561.3Link to Protein Sequence:NP_001130033.3Re-query CCDS DB by Nucleotide ID:NM_001136561Re-query CCDS DB by Protein ID:NP_001130033Link to BLAST:NP_001130033.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001130033.3 293 B2RXH8 293 100% 0 0

Chromosomal Locations for CCDS 76105.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13115519 13116400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCCAGCAACGTTACCAACAAGATGGATCCTCACTCCGTGAACTCCCGTGTGTTCATTGGGAATCTCA
ACACTCTTGTTGTCAAGAAATCTGATGTGGAGGCGATCTTTTCCAAGTATGGCAAAATTGCGGGCTGCTC
TGTTCATAAGGGCTTTGCCTTCGTTCAATATGATAAGGAGAAAAATGCCCGGGCTGCTGTAGCAGGAGAG
GATGGCAGAATGATTGCTAGCCAGGTTGCAGTTATTAACCTGGCTGCAGAGCCAAAAGTGAACCGAGGAA
ACGCAGGTGTGAAACGATCCGCAGCGGAGATGTACGGCTCCTCTTTTGACTTGGACTATGGCTTTCAACG
GGATTATTATGATGGGATGTACAGTTTCCCAGCACGTGTACCTCCTCCTCCTCCCATTGCTCTGGCTGTA
GTGCCCTCGAAACGCCAGCGCATATCAGGAAACACCTCACGAAGGGGCAAAAGTGGCTTCAATTCTAAGA
GTGGAAAGCGGGGATCTTCCAAGTCTGGAAAGCTGAAAGGAGATGACCTTCAGGCCATTAAGCAGGAGTT
GACCCAGATAAAACAGAAAGTGGATTCTCTCCTGGAAAACCTGGAAAAAATTGAAAAGGAACAGAGCAAA
CAAGAGGTAGAGGTGAAAAATGCTAAGTCAGAAGAGGAGCAGAGCAGTAGCTCCATGAAGAAAGATGAGA
CTCATGTAAAGATGGAGTCTGAGGGGGGTGCAGAAGACTCTGCTGAGGAGGGGGACCCACTGGATGATGA
TGATAATGAAGATCAGGGGGACAACCAGCTTCATTTGATCAAGAATAATGAAAAAGATGCTGAGGAAGGA
GAGGATAACAGAGACAGCACCAATGGCCAGGATGACTCTTAA

Translation (293 aa):
MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGE
DGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYYDGMYSFPARVPPPPPIALAV
VPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSK
QEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEG
EDNRDSTNGQDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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