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Report for CCDS30833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30833.1 Public Homo sapiens 1 BCL9 24 110 108 CCDS HistoryNCBI Gene:607Re-query CCDS DB by CCDS ID:30833.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000234739.8 ENSP00000234739.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000234739.8Link to Ensembl Protein Viewer:ENSP00000234739.3Re-query CCDS DB by Nucleotide ID:ENST00000234739Re-query CCDS DB by Protein ID:ENSP00000234739
Original member Current member NCBI NM_004326.4 NP_004317.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004326.4Link to Protein Sequence:NP_004317.2Re-query CCDS DB by Nucleotide ID:NM_004326Re-query CCDS DB by Protein ID:NP_004317Link to BLAST:NP_004317.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004317.2 1426 O00512 1426 100% 0 0

Chromosomal Locations for CCDS 30833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 147611837 147611889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 147612883 147613199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 147614427 147614616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 147615803 147615902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 147618816 147621057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 147622271 147622531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 147623842 147624959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4281 nt):
ATGCATTCCAGTAACCCTAAAGTGAGGAGCTCTCCATCAGGAAACACACAGAGTAGCCCTAAGTCAAAGC
AGGAGGTGATGGTCCGTCCCCCTACAGTGATGTCCCCATCTGGAAACCCCCAGCTGGATTCCAAATTCTC
CAATCAGGGTAAACAGGGGGGCTCAGCCAGCCAATCCCAGCCATCCCCCTGTGACTCCAAGAGTGGGGGC
CATACCCCTAAAGCACTCCCTGGCCCAGGTGGGAGCATGGGGCTGAAGAATGGGGCTGGAAATGGTGCCA
AGGGCAAGGGGAAAAGGGAGCGAAGTATTTCCGCCGACTCCTTTGATCAGAGAGATCCTGGGACTCCAAA
CGATGACTCTGACATTAAAGAATGTAATTCTGCTGACCACATAAAGTCCCAGGATTCCCAGCACACACCA
CACTCGATGACCCCATCAAATGCTACAGCCCCCAGGTCTTCTACCCCCTCCCATGGCCAAACTACTGCCA
CAGAGCCCACACCTGCTCAGAAGACTCCAGCCAAAGTGGTGTACGTGTTTTCTACTGAGATGGCCAATAA
AGCTGCAGAAGCTGTTTTGAAGGGCCAGGTTGAAACTATCGTCTCTTTCCACATCCAGAACATTTCTAAC
AACAAGACAGAGAGAAGCACAGCGCCTCTGAACACACAGATATCTGCCCTTCGGAATGATCCGAAACCTC
TCCCACAACAGCCCCCAGCTCCGGCCAACCAGGACCAGAATTCTTCCCAGAATACCAGACTGCAGCCAAC
TCCACCCATTCCGGCACCAGCACCCAAGCCTGCCGCACCCCCACGTCCCCTGGACCGGGAGAGTCCTGGG
GTAGAAAACAAACTGATTCCTTCTGTAGGAAGTCCTGCCAGCTCCACTCCACTGCCCCCAGATGGTACTG
GGCCCAACTCAACTCCCAACAATAGGGCAGTGACCCCTGTCTCCCAGGGGAGCAATAGCTCTTCAGCAGA
TCCCAAAGCCCCTCCGCCTCCACCAGTGTCCAGTGGCGAGCCCCCCACACTGGGAGAGAATCCCGATGGC
CTATCTCAGGAGCAGCTGGAGCACCGGGAGCGCTCCTTACAAACTCTCAGAGATATCCAGCGCATGCTTT
TTCCTGATGAGAAAGAATTCACAGGAGCACAAAGTGGGGGACCGCAGCAGAATCCTGGGGTATTAGATGG
GCCTCAGAAAAAACCAGAAGGGCCAATACAGGCCATGATGGCCCAATCCCAAAGCCTAGGTAAGGGACCT
GGGCCCCGGACAGACGTGGGAGCTCCATTTGGCCCTCAAGGACATAGAGATGTACCCTTTTCTCCAGATG
AAATGGTTCCACCTTCTATGAACTCCCAGTCTGGGACCATAGGACCCGACCACCTTGACCATATGACTCC
CGAGCAGATAGCGTGGCTGAAACTGCAGCAGGAGTTTTATGAAGAGAAGAGGAGGAAGCAGGAACAAGTG
GTTGTCCAGCAGTGTTCCCTCCAGGACATGATGGTCCATCAGCACGGGCCTCGGGGAGTGGTCCGAGGAC
CCCCCCCTCCATACCAGATGACCCCTAGTGAAGGCTGGGCACCTGGGGGTACAGAGCCATTTTCTGATGG
TATCAACATGCCACATTCTCTGCCCCCGAGGGGCATGGCTCCCCACCCCAACATGCCAGGGAGCCAGATG
CGCCTCCCTGGATTTGCAGGCATGATAAACTCTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCATCTA
GACCAGGTCTTTCTGGAGTCAGTTGGCCAGATGATGTGCCAAAAATCCCAGATGGTCGAAATTTTCCTCC
TGGCCAGGGCATTTTCAGCGGTCCTGGCCGAGGGGAACGCTTCCCAAACCCCCAAGGATTGTCTGAAGAG
ATGTTTCAGCAGCAGCTGGCAGAGAAACAGCTGGGTCTCCCCCCAGGGATGGCCATGGAAGGCATCAGGC
CCAGCATGGAGATGAACAGGATGATTCCAGGCTCCCAGCGCCACATGGAGCCTGGGAATAACCCCATTTT
CCCTCGAATACCAGTTGAGGGCCCTCTGAGTCCTTCTAGGGGTGACTTTCCAAAAGGAATTCCCCCACAG
ATGGGCCCTGGTCGGGAACTTGAGTTTGGGATGGTTCCTAGTGGGATGAAGGGAGATGTCAATCTAAATG
TCAACATGGGATCCAACTCTCAGATGATACCTCAGAAGATGAGAGAGGCTGGGGCGGGCCCTGAGGAGAT
GCTGAAATTACGCCCAGGTGGCTCAGACATGCTGCCTGCTCAGCAGAAGATGGTGCCACTGCCATTTGGT
GAGCACCCCCAGCAGGAGTATGGCATGGGCCCCAGACCATTCCTTCCCATGTCTCAGGGTCCAGGCAGCA
ACAGTGGCTTGCGGAATCTCAGAGAACCAATTGGGCCCGACCAGAGGACTAACAGCCGGCTCAGTCATAT
GCCACCACTACCTCTCAACCCTTCCAGTAACCCCACCAGCCTCAACACAGCTCCTCCAGTTCAGCGCGGC
CTGGGGCGGAAGCCCTTGGATATATCTGTGGCAGGCAGCCAGGTGCATTCCCCAGGCATTAACCCTCTGA
AGTCTCCCACGATGCACCAAGTCCAGTCACCAATGCTGGGCTCGCCCTCGGGGAACCTCAAGTCCCCCCA
GACTCCATCGCAGCTGGCAGGCATGCTGGCGGGCCCAGCTGCTGCTGCTTCCATTAAGTCCCCCCCTGTT
TTGGGGTCTGCTGCTGCTTCACCTGTCCACCTCAAGTCTCCATCACTTCCTGCCCCGTCACCTGGATGGA
CCTCTTCTCCAAAACCTCCCCTTCAGAGTCCTGGGATCCCTCCAAACCATAAAGCACCCCTCACCATGGC
CTCCCCAGCCATGCTGGGAAATGTAGAGTCAGGTGGCCCCCCACCTCCTACAGCCAGCCAGCCTGCCTCT
GTGAATATCCCTGGAAGTCTTCCCTCTAGTACACCTTATACCATGCCTCCAGAGCCAACCCTTTCCCAGA
ACCCACTCTCTATTATGATGTCTCGAATGTCCAAGTTTGCAATGCCCAGTTCCACCCCGTTATACCATGA
TGCTATCAAGACTGTGGCCAGCTCAGATGACGACTCCCCTCCAGCTCGTTCTCCCAACTTGCCATCAATG
AATAATATGCCAGGAATGGGCATTAATACACAGAATCCTCGAATTTCAGGTCCAAACCCCGTGGTTCCGA
TGCCAACCCTCAGCCCAATGGGAATGACCCAGCCACTTTCTCACTCCAATCAGATGCCCTCTCCAAATGC
CGTGGGACCCAACATACCTCCTCATGGGGTCCCAATGGGGCCTGGCTTGATGTCACACAATCCTATCATG
GGGCATGGGTCCCAGGAGCCACCGATGGTACCTCAAGGACGGATGGGCTTCCCCCAGGGCTTCCCTCCAG
TACAGTCTCCCCCACAGCAGGTTCCATTCCCTCACAATGGCCCCAGTGGGGGGCAGGGCAGCTTCCCAGG
AGGGATGGGTTTCCCAGGAGAAGGCCCCCTTGGCCGCCCCAGCAACCTGCCCCAAAGTTCAGCAGATGCA
GCACTTTGCAAGCCTGGAGGCCCCGGGGGTCCTGACTCCTTCACTGTCCTGGGGAACAGCATGCCTTCGG
TGTTTACAGACCCAGATCTGCAGGAGGTCATCCGACCTGGAGCCACCGGAATACCTGAGTTTGATCTATC
CCGCATTATTCCATCTGAGAAGCCCAGCCAGACGCTGCAATATTTCCCTCGAGGGGAAGTTCCAGGCCGT
AAACAGCCCCAGGGTCCTGGACCTGGGTTTTCACACATGCAGGGGATGATGGGCGAACAAGCCCCCAGAA
TGGGACTAGCATTACCTGGCATGGGAGGTCCAGGGCCAGTGGGAACTCCGGACATCCCTCTTGGTACAGC
TCCATCCATGCCAGGCCACAACCCCATGAGACCACCAGCCTTTCTCCAACAAGGCATGATGGGACCTCAC
CATCGGATGATGTCACCAGCACAATCTACAATGCCCGGCCAGCCCACCCTGATGAGCAATCCAGCTGCTG
CCGTGGGCATGATTCCTGGCAAGGATCGGGGGCCTGCCGGGCTCTACACCCACCCTGGGCCTGTGGGCTC
TCCAGGCATGATGATGTCCATGCAGGGCATGATGGGACCCCAACAGAACATCATGATCCCCCCACAGATG
AGGCCCCGGGGCATGGCTGCTGACGTGGGCATGGGTGGATTTAGCCAAGGACCTGGCAACCCAGGAAACA
TGATGTTTTAA

Translation (1426 aa):
MHSSNPKVRSSPSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDSKFSNQGKQGGSASQSQPSPCDSKSGG
HTPKALPGPGGSMGLKNGAGNGAKGKGKRERSISADSFDQRDPGTPNDDSDIKECNSADHIKSQDSQHTP
HSMTPSNATAPRSSTPSHGQTTATEPTPAQKTPAKVVYVFSTEMANKAAEAVLKGQVETIVSFHIQNISN
NKTERSTAPLNTQISALRNDPKPLPQQPPAPANQDQNSSQNTRLQPTPPIPAPAPKPAAPPRPLDRESPG
VENKLIPSVGSPASSTPLPPDGTGPNSTPNNRAVTPVSQGSNSSSADPKAPPPPPVSSGEPPTLGENPDG
LSQEQLEHRERSLQTLRDIQRMLFPDEKEFTGAQSGGPQQNPGVLDGPQKKPEGPIQAMMAQSQSLGKGP
GPRTDVGAPFGPQGHRDVPFSPDEMVPPSMNSQSGTIGPDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQV
VVQQCSLQDMMVHQHGPRGVVRGPPPPYQMTPSEGWAPGGTEPFSDGINMPHSLPPRGMAPHPNMPGSQM
RLPGFAGMINSEMEGPNVPNPASRPGLSGVSWPDDVPKIPDGRNFPPGQGIFSGPGRGERFPNPQGLSEE
MFQQQLAEKQLGLPPGMAMEGIRPSMEMNRMIPGSQRHMEPGNNPIFPRIPVEGPLSPSRGDFPKGIPPQ
MGPGRELEFGMVPSGMKGDVNLNVNMGSNSQMIPQKMREAGAGPEEMLKLRPGGSDMLPAQQKMVPLPFG
EHPQQEYGMGPRPFLPMSQGPGSNSGLRNLREPIGPDQRTNSRLSHMPPLPLNPSSNPTSLNTAPPVQRG
LGRKPLDISVAGSQVHSPGINPLKSPTMHQVQSPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPV
LGSAAASPVHLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGNVESGGPPPPTASQPAS
VNIPGSLPSSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIKTVASSDDDSPPARSPNLPSM
NNMPGMGINTQNPRISGPNPVVPMPTLSPMGMTQPLSHSNQMPSPNAVGPNIPPHGVPMGPGLMSHNPIM
GHGSQEPPMVPQGRMGFPQGFPPVQSPPQQVPFPHNGPSGGQGSFPGGMGFPGEGPLGRPSNLPQSSADA
ALCKPGGPGGPDSFTVLGNSMPSVFTDPDLQEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGR
KQPQGPGPGFSHMQGMMGEQAPRMGLALPGMGGPGPVGTPDIPLGTAPSMPGHNPMRPPAFLQQGMMGPH
HRMMSPAQSTMPGQPTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSPGMMMSMQGMMGPQQNIMIPPQM
RPRGMAADVGMGGFSQGPGNPGNMMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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