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Report for CCDS41255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41255.1 Public Homo sapiens 1 PRAMEF10 24 110 108 CCDS HistoryNCBI Gene:343071Re-query CCDS DB by CCDS ID:41255.1Re-query CCDS DB by GeneID:343071See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235347.4 ENSP00000235347.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000235347.4Link to Ensembl Protein Viewer:ENSP00000235347.4Re-query CCDS DB by Nucleotide ID:ENST00000235347Re-query CCDS DB by Protein ID:ENSP00000235347
Original member Current member NCBI NM_001039361.4 NP_001034450.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039361.4Link to Protein Sequence:NP_001034450.3Re-query CCDS DB by Nucleotide ID:NM_001039361Re-query CCDS DB by Protein ID:NP_001034450Link to BLAST:NP_001034450.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034450.3 474 O60809 474 100% 0 0

Chromosomal Locations for CCDS 41255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12892916 12893474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12894586 12895164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12895561 12895847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGAGCCTCCAGGCCCCATCCAGACTGCTGGAGCTGGCAGGGCAGAGCCTGCTGAGGAACCAGTTCTTGA
CCATCTTCACCCTGGATGAGCTGCCCAGGGAGGTCTTCCCTCTGATGTTCATGGAGGCCTTCAGCATGAG
ACGTTTTGAGGCCCTGAAGCTGATGGTGCAGGCCTGGCCCTTCCTCCGCCTCCCTCTGGGATCCCTGATG
AAGACACCTCATCTGGAGACCTTGCAAGCTGTCCTGAGGGGACTTGATACACTGGTGGCCCAGAAGGTTC
GCCCCAGGAGGTGGAAACTTCAAGTGCTGGATTTGAGGGATGTTGATGAGAATTTCTGGACCATATGGTC
TGGAGCCAGGGTCCTCTCCTGCTCCCCAGAGGCCATGAGTAAGAGGCAGACAGTGGAGGACTGTCCAAGG
ATGGGAGAGCGCCAGCCCTTGAAGGTGTTCATAGACCTCTGCCTAAAGGAAAGTACACTGGATGAATGCC
TGAGCTACCTTTTTGGGTGGATCCACTACAGAAGAGGCCTAGTGCACCTGTGTTGTAGTAAGGTGCAGAA
TTACTCAATGCCCACTTCAAGTTTCAGAAATCTATTGGAAAGGATATACCCAGACAGTATCCAGGAGTTG
GAAGTCTGGAAAAAGTGCTCTCTCAATAAAACGGGAAAGTTTGCCCCTTACCTGAGCCAGATGAGCAATC
TTCGTGAACTCTTTTTAGCCTTCGGTTATGAGCGTGAGTTGTACGTGAGCGTCCAGTGGCCGTGCATTCC
TGACTTGGACTCTCCATTCCTCTGCCTGTACTACCCCCAGATGCTTTATATAAAAAAGATCAGTAATATC
AAAGAGCACCTGGAGCACCTGCTCAGGTACCTCAAGAACCCCTTGGGGGCCTTTATATTCAGTGATGCTT
ACCTAACTGATCGGGACATGGAGTGTCTGTCTCAGTACCCAAGCCTCAGTCAGCTAAAGGAGCTGCGTCT
GATTCATATCCTAATGTGGACCACCAATCTTGAGCCCCTTGGAGTTCTGCTGGAGAAAGTTGCTGCTACT
CTCAAGACCCTCGTCTTAAAGGACTGTCGGATCCAGGACCCCCAACTCAGGGTCCTCCTGCCTGCCCTGA
GCCACTGTTCCCAGCTCACCACCTTCAACTTTCATGGAAATGAGACCTCCATGAATGCTCTGAAAGACCT
GCTGCGTCACACACGTGGGCTGAGCAAGTTAGGCCTGGAGTTGTATCCTGCCCCTCTGGAGAGTCTTGAC
TACAAGGGTCATGTCAATTGGGAGATCCTCACCCCAATTCGGGCTGAGCTGATGCGTACACTCAGGGAAG
TCAGGCAGCCCAAGAGGATCTTCTTTGGTCCCGTCCCTTGCCCTAACTGTGGCTCATGGCCATCTGAGAA
AGTGGACTTCCATCTTTGCTCCTAG

Translation (474 aa):
MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLM
KTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLRDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPR
MGERQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQEL
EVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNI
KEHLEHLLRYLKNPLGAFIFSDAYLTDRDMECLSQYPSLSQLKELRLIHILMWTTNLEPLGVLLEKVAAT
LKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLD
YKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPNCGSWPSEKVDFHLCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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