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Report for CCDS25245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25245.1 Public Mus musculus 11 Utp18 23 108 98 CCDS HistoryNCBI Gene:217109Re-query CCDS DB by CCDS ID:25245.1Re-query CCDS DB by GeneID:217109See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066888.9 ENSMUSP00000068103.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066888.9Link to Ensembl Protein Viewer:ENSMUSP00000068103.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066888Re-query CCDS DB by Protein ID:ENSMUSP00000068103
Original member Current member NCBI NM_001013375.1 NP_001013393.1 Accepted alive Link to Nucleotide Sequence:NM_001013375.1Link to Protein Sequence:NP_001013393.1Re-query CCDS DB by Nucleotide ID:NM_001013375Re-query CCDS DB by Protein ID:NP_001013393Link to BLAST:NP_001013393.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013393.1 552 Q5SSI6 552 100% 0 0

Chromosomal Locations for CCDS 25245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93860813 93860837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93861959 93862101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93866346 93866520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93868331 93868454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93869806 93869896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93870480 93870580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93875784 93875958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93876055 93876180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93877984 93878072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93880063 93880133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93882075 93882173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93883667 93883782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93885334 93885657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGCCGCCCGAACGCAAGAGCCGGACGAGACGAGACCGGAGAGCCGGCGCAACGCCGGGGAGGAAAGCCA
GACCCGGGAGCGGCAGCACGCCCGCAAAGGCCGCCCGTTCATCCCAACGGACACAGCCGGCCGAGCCGAG
GGCGGCCCCTAGCGCGGGATCCGCGGCGGCGGCGGCAGAGGAGGAGGAGAGCCGGCTCCGGCAGCGGAAC
CGCCTGACGCTAGAGGACGATAAGCCGGCCGCCGAGCGTTGCCTGGAGCAGCTCGTCTTCGGCGATGTCG
AGGACGACGAGGACGCGCTGCTGCAGCGGCTGCGGAGCTCGCGGGGTCAGCTACATGGAAGCTCAGATGA
ATCGGAAGTGGAAAATGAAGCAAAAGACATTTTTTCTCAGAAGAAGAAGCAGCCAGTTTGGGTGGATGAA
GATGATGAAGATGAGGAAATAGTTGACATGTCGAACAATCGGTTTCGGAAAGATATAATGAAAAATGCCA
GTGAAAGTAAACTTTCAAAAGATAAACTTCAAAAGAGACTTAAAGAAGAATTCCAGCATGCCATGGGAGG
AGTACCTGATTGGGCAGAAGCTGGGAGCAAGCGGAGGACATCTTCAGATGATGAAAGTGAAGAGGATGAA
GATGATTTGTTGCAAAGGACTGGGAATTTCATCTCCACATCCACGTCTCTTCCAAGAGGAATCTTGAAGA
TGAAGAACTGCCGGCCTGCCAATGCTGAACGGCCAACCACTGCTCGGATCTCGTCAGTGCAGTTCCATCC
TGGTGCACAGGTGGTGATGGTCTCTGGGGTAGATAATGCTATCTCCCTCTTTCAGGTTGATGGCAAAACA
AACCCTAAAATCCAGAGCATCTATTTGGAGAAGTTTCCAATCTTTAAGGCTTGTTTCAGTGCTAATGGAG
AAGAGGTTTTAGCCACAAGTATGCACAGCAAGGTTCTTTATGTCTATGATATGCTAGCTGGGAAGTTAAT
TCCTGTACATCAAGTGAGAGGTTTGAAAGAGAAAACAGTGAAGCAGTTTGAAGTCTCCCCAGATGGATCC
TTCTTGCTCATAAGCGGCATTGCAGGGTTTTCTCACTTGCTATCGATGAAGACAAAAGAACTCATAGGTA
GCATGAAGATTAATGGACGAATTGCGGCATCCACATTCTCTTCAGATAGTAAGAGGATATATACCTATTC
TGAGAATGGAGAAGTTTATGTGTGGGATGTGAATTCAAGGAAGTGCATGAACAGATTTCTTGATGAAGGC
AGTTTATGTGGATTGAGCATTGCTGCATCAAAGAATGGACAGTATGTGGCTTGTGGTTCTAAGAGTGGAG
TGGTAAACATATACAATCAAGATTCCTGCCTCCAGCAAACAAACCCAAAGCCAATAAAAGCAATAATGAA
TCTGGTTACTGGTGTTACTTCCTTGGCCTTTAATCCTACCACAGAAATCTTGGCAGTGGCTTCAAGAAAA
ATGAAAGAAGCTGTCAGATTGGTTCATCTTCCTTCCTGTACAGTATTTTCTAACTTTCCAGTTTTTAAAA
AGAGTACTCTTTCTCGTGTTCAAACCATGGATTTTTCTCCCAGAGGTGGATACTTTGCCTTAGGGAATGA
AAAGGGCAGGGCCCTGATGTATAGGTTGCATCATTACTCAGACTTCTGA

Translation (552 aa):
MPPERKSRTRRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPAEPRAAPSAGSAAAAAEEEESRLRQRN
RLTLEDDKPAAERCLEQLVFGDVEDDEDALLQRLRSSRGQLHGSSDESEVENEAKDIFSQKKKQPVWVDE
DDEDEEIVDMSNNRFRKDIMKNASESKLSKDKLQKRLKEEFQHAMGGVPDWAEAGSKRRTSSDDESEEDE
DDLLQRTGNFISTSTSLPRGILKMKNCRPANAERPTTARISSVQFHPGAQVVMVSGVDNAISLFQVDGKT
NPKIQSIYLEKFPIFKACFSANGEEVLATSMHSKVLYVYDMLAGKLIPVHQVRGLKEKTVKQFEVSPDGS
FLLISGIAGFSHLLSMKTKELIGSMKINGRIAASTFSSDSKRIYTYSENGEVYVWDVNSRKCMNRFLDEG
SLCGLSIAASKNGQYVACGSKSGVVNIYNQDSCLQQTNPKPIKAIMNLVTGVTSLAFNPTTEILAVASRK
MKEAVRLVHLPSCTVFSNFPVFKKSTLSRVQTMDFSPRGGYFALGNEKGRALMYRLHHYSDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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