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Report for CCDS30471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30471.1 Public Mus musculus X Hsd17b10 23 108 98 CCDS HistoryNCBI Gene:15108Re-query CCDS DB by CCDS ID:30471.1Re-query CCDS DB by GeneID:15108See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026289.9 ENSMUSP00000026289.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026289.9Link to Ensembl Protein Viewer:ENSMUSP00000026289.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026289Re-query CCDS DB by Protein ID:ENSMUSP00000026289
Original member Current member NCBI NM_016763.2 NP_058043.3 Accepted alive Link to Nucleotide Sequence:NM_016763.2Link to Protein Sequence:NP_058043.3Re-query CCDS DB by Nucleotide ID:NM_016763Re-query CCDS DB by Protein ID:NP_058043Link to BLAST:NP_058043.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058043.3 261 O08756 261 98.4674% 0 4

Chromosomal Locations for CCDS 30471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152001908 152001934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152002278 152002442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152003361 152003525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152003653 152003781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152003862 152003970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152004139 152004329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCTGCGGCAGTTCGGAGCGTGAAGGGCTTGGTCGCGGTAGTAACTGGAGGAGCCTCGGGCCTTGGCC
TAGCTACGGCCAAAAGACTGGTGGGACAAGGGGCCACAGCTGTACTTCTGGATGTACCTGACTCAGAGGG
TGAAGCCCAAGCCAAGAAGTTAGGAGAAAGCTGCATATTTGCCCCAGCAAATGTGACCTCTGAGAAGGAG
ATACAAGCAGCTTTGACTCTAGCAAAAGAAAAGTTTGGCCGTATAGATGTGGCTGTCAACTGTGCAGGTA
TTGCAGTGGCCATTAAGACATACCACCAAAAGAAGAACAAGATCCATACTTTGGAGGACTTCCAGCGGGT
TATCAATGTGAATCTTATAGGCACTTTCAATGTGATCCGCCTGGTTGCTGGGGAGATGGGCCAGAATGAA
CCAGACCAGGGAGGCCAACGTGGAGTTATCATTAACACTGCCAGTGTGGCTGCCTTTGAGGGCCAGGTTG
GACAAGCTGCATACTCTGCATCCAAAGGGGGCATAGTGGGCATGACACTGCCCATTGCTCGAGATCTGGC
TCCTACAGGCATCCGTGTGGTAACAATTGCTCCAGGTTTGTTTGCCACCCCACTGCTTACCACCCTTCCA
GAGAAAGTGCGAAACTTCTTGGCCAGCCAGGTACCCTTCCCCAGCCGACTAGGTGACCCCGCTGAATATG
CTCATCTGGTACAGACCATAATCGAGAACCCATTCTTGAATGGAGAGGTCATCCGGCTGGATGGGGCCAT
TCGAATGCAGCCTTAA

Translation (261 aa):
MAAAVRSVKGLVAVVTGGASGLGLATAKRLVGQGATAVLLDVPDSEGEAQAKKLGESCIFAPANVTSEKE
IQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHQKKNKIHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNE
PDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPTGIRVVTIAPGLFATPLLTTLP
EKVRNFLASQVPFPSRLGDPAEYAHLVQTIIENPFLNGEVIRLDGAIRMQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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