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Report for CCDS13458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13458.1 Public Homo sapiens 20 RAE1 24 110 108 CCDS HistoryNCBI Gene:8480Re-query CCDS DB by CCDS ID:13458.1Re-query CCDS DB by GeneID:8480See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13458.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371242.6 ENSP00000360286.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371242.6Link to Ensembl Protein Viewer:ENSP00000360286.2Re-query CCDS DB by Nucleotide ID:ENST00000371242Re-query CCDS DB by Protein ID:ENSP00000360286
Original member Current member EBI ENST00000395840.6 ENSP00000379181.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395840.6Link to Ensembl Protein Viewer:ENSP00000379181.2Re-query CCDS DB by Nucleotide ID:ENST00000395840Re-query CCDS DB by Protein ID:ENSP00000379181
Original member Current member EBI ENST00000395841.7 ENSP00000379182.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395841.7Link to Ensembl Protein Viewer:ENSP00000379182.2Re-query CCDS DB by Nucleotide ID:ENST00000395841Re-query CCDS DB by Protein ID:ENSP00000379182
Original member Current member NCBI NM_001015885.2 NP_001015885.1 Accepted alive Link to Nucleotide Sequence:NM_001015885.2Link to Protein Sequence:NP_001015885.1Re-query CCDS DB by Nucleotide ID:NM_001015885Re-query CCDS DB by Protein ID:NP_001015885Link to BLAST:NP_001015885.1
Original member Current member NCBI NM_003610.4 NP_003601.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003610.4Link to Protein Sequence:NP_003601.1Re-query CCDS DB by Nucleotide ID:NM_003610Re-query CCDS DB by Protein ID:NP_003601Link to BLAST:NP_003601.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001015885.1 368 P78406 368 100% 0 0
NP_003601.1 368 P78406 368 100% 0 0

Chromosomal Locations for CCDS 13458.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 57354039 57354128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57354712 57354816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57356446 57356538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57365356 57365442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57366807 57366893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57367008 57367079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57368705 57368812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57373475 57373581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57373663 57373738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57374607 57374801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57378013 57378099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGAGCCTGTTTGGAACAACCTCAGGTTTTGGAACCAGTGGGACCAGCATGTTTGGCAGTGCAACTACAG
AC
AATCACAATCCCATGAAGGATATTGAAGTAACATCATCTCCTGATGATAGCATTGGTTGTCTGTCTTT
T
AGCCCACCAACCTTGCCGGGGAACTTTCTTATTGCAGGATCATGGGCTAATGATGTTCGCTGCTGGGAA
GTT
CAAGACAGTGGACAGACCATTCCAAAAGCCCAGCAGATGCACACTGGGCCTGTGCTTGATGTCTGCT
GG
AGTGACGATGGGAGCAAAGTGTTTACGGCATCGTGTGATAAAACTGCCAAAATGTGGGACCTCAGCAG
T
AACCAAGCGATACAGATCGCACAGCATGATGCTCCTGTTAAAACCATCCATTGGATCAAAGCTCCAAAC
TAC
AGCTGTGTGATGACTGGGAGCTGGGATAAGACTTTAAAGTTTTGGGATACTCGATCGTCAAATCCTA
TG
ATGGTTTTGCAACTCCCTGAAAGGTGTTACTGTGCTGACGTGATATACCCCATGGCTGTGGTGGCAAC
T
GCAGAGAGGGGCCTGATTGTCTATCAGCTAGAGAATCAACCTTCTGAATTCAGGAGGATAGAATCTCCA
CTG
AAACATCAGCATCGGTGTGTGGCTATTTTTAAAGACAAACAGAACAAGCCTACTGGTTTTGCCCTGG
GA
AGTATCGAGGGGAGAGTTGCTATTCACTATATCAACCCCCCGAACCCCGCCAAAGATAACTTCACCTT
T
AAATGTCATCGATCTAATGGAACCAACACTTCAGCTCCTCAGGACATTTATGCGGTAAATGGAATCGCG
TTC
CATCCTGTTCATGGCACCCTTGCAACTGTGGGATCTGATGGTAGATTCAGCTTCTGGGACAAAGATG
CC
AGAACAAAACTAAAAACTTCGGAACAGTTAGATCAGCCCATCTCAGCTTGCTGTTTCAATCACAATGG
A
AACATATTTGCATACGCTTCCAGCTACGACTGGTCAAAGGGACATGAATTTTATAATCCCCAGAAAAAA
AAT
TACATTTTCCTGCGTAATGCAGCCGAAGAGCTAAAGCCCAGGAATAAGAAGTAG


Translation (368 aa):
MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE
V
QDSGQTIPKAQQMHTGPVLDVCWSD
DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPN
Y
SCVMTGSWDKTLK
FWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP
L
KHQ
HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIA
F
HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK
GHEFYNPQKK
N
YIFLRNAAEELKPRNKK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser