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Report for CCDS39025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39025.1 Public Mus musculus 5 Rint1 23 108 98 CCDS HistoryNCBI Gene:72772Re-query CCDS DB by CCDS ID:39025.1Re-query CCDS DB by GeneID:72772See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030852.12 ENSMUSP00000030852.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030852.12Link to Ensembl Protein Viewer:ENSMUSP00000030852.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030852Re-query CCDS DB by Protein ID:ENSMUSP00000030852
Original member Current member NCBI NM_177323.4 NP_796297.2 Accepted alive Link to Nucleotide Sequence:NM_177323.4Link to Protein Sequence:NP_796297.2Re-query CCDS DB by Nucleotide ID:NM_177323Re-query CCDS DB by Protein ID:NP_796297Link to BLAST:NP_796297.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796297.2 792 Q8BZ36-1 792 100% 0 0

Chromosomal Locations for CCDS 39025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 23787841 23787882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23788290 23788335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23794303 23794487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23800595 23800836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23805310 23805483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23805571 23805720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23807039 23807195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23809784 23809894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23809969 23810194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23810897 23811034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23811710 23811909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23815652 23815866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23816739 23816919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23817035 23817153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23819388 23819580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGCTTGCGGCTGACGATATCGGCGAAGTGCCGGCAGCCCCGTGCTGCCCCGAGAGTGGTGACGAAACGA
AGAACACAGACGTGAAAAGTGACGTGAACACTGCAGCTCCTGCTGGAAGCGAGCAGCTCAGCCAAGGTGG
CAGTGACGACGCGCTCCTTTCCTATGTGTCTGCATTCATAGAGAAGGAAGTGGGAAGTGACCTTAAGTCT
TTGAAGACACTTGGTAAACTCATAGAACAAATGACAGAAAGCAAAGTGAAGTTAGAAGAACAGGTACTTA
CAATTTCATCAGAAATCCCTAAAAGAATTCAAAGTGCTTTAAAAGATGCAGAGGAATCCAAACAACTTCT
TGATGAGTTTCTGGAGCAGGAAGCGCCTCTCTTCAGCTCCATTAGCAGCCATCTGCTGATGGCTCAGCCC
TGGATGGATGACCTTGGAGCCATGATCACCCAGATGGAAGAGATTGAGCGGCATCTCGCATACCTTAAGT
GGGTGTCGCAGACTGAGGAGCTGAGTGATAACATTCAGCAGTACCTGATGACCAACAGTGTGCCAGAGGC
AGCCTCTCTCCTGGTGACCATGACAGAACTGGACATCCAGCTTCAGGAGTCATCCTGTACTCATCTTCTT
AGTTTCATGAGAGCCACAGTTAAATTCTGGCATAAAATTCTCAAGGACAAGCTTACCAGTGATTTTGAGG
AAGTCTTGGCACAGCTGCATTGGCCATTCACCTCACATACCCAGTCGCAAACCGTTGGCGGGAGCCGGCC
TGCCGGTACCCCGGAGCTGTACAGTAGCCTGGACACACTGTTTTGTCAGCTGTTGAAACTACAGGCCTCA
GATGAGTTATTAACTGAGCCAAAACAACTCCCAGAAAAATACTGTCTTCCTGCCTCCCCTCCCGTGACCC
TGCCCATACAGGTCATGCTGGCTCCCCTGCAGAAGAGATTCAGGTACCACTTCAGAGGCAGCCGGCAGAC
CAACGTCATGAGCAAGCCTGAATGGTACTTGGCTCAGGTACTTATGTGGATTGGAAACCATACACAGTTT
CTGGATGAGAAGATTCAGCCAATATTGGACAAAGTGGGCTCTGCAGTAAATGCAAGGCTTGAGTTTTCCC
GTGGCCTTGTGATGCTCATTCTTGAGAAGCTGGCTTCTGATATCCCCTGCCTGCTCTACGATGACAGCCT
CTTCTGTCACCTGGTGGATGAGGTGCTGCTGTTTGAAAGGGAGCTGCACACCGTTCACGGCTATCCCAGC
ACATTCGCCAGCTGCATGCACATCCTGTCGGAGGAGACCTGTTTCCAGAGATGGCTGACTGTGGAGAGAA
AGTTTGCTCTTCAAAAAATGGACTCAATGCTTTCGTCAGAGGCTGCCTGGGTATCCCAGTATAAAGACAT
CTCTGATGTGGATGAAATGAAGGTTCCAGACTGTGCGGAAGTCTTTATGACCCTGCTTTTGGTTATAACT
GACAGGTATAAAAATCTCCCCACAGCCTCCCGGAAACTGCAGTTCCTGGAGCTACAGAAGGACCTGGTAG
ATGATTTCAGGATCCGGTTAACGCAGGTGATGAAGGAGGAGACGAGAGCGGCCCTGGGCTTTCGGTACTG
TGCGATTCTCAATGCCGTGAACTATATCTCAGCAGTGCTGGCAGACTGGGCTGACAATGTTTTCTTTCTG
CAGCTGCAACAGGCAGCACTGGAGGTCTTTGCAGAGAATAACGTCCTCAGTAAACTGCAGCTGGGACAGC
TGGCCTCCATGGAGAGCTCGGTCTTCGATGACATGATCAACCTCTTAGAGCGTTTGAAGCTTGATATGTT
GACCCGCCAAGTAGACCATGTTTTCAGAGAAGTGAAAGACTCTGCAAAGTTGTATAAGAAAGAAAGATGG
TTGTCCCTGCCGTCTCAGTCGGAACAGGCAGTGATGTCGCTGTCCAGCTCAGCCTGCCCGCTCCTGCTGA
CCTTACGGGACCGTCTGCTCCAGCTGGAGCAGCAGCTGTGTTTCTCGCTATTCAGAATCTTCTGGCAAAT
GCTGGCAGAGAAGCTGGACCTGTACATCTACCAGGAAATAATCCTTGCTAACCACTTCAACGAAGGAGGA
GCAGCCCAGCTGCAGTTTGATATGACAAGGAACCTCTTTCCTTTGTTTTCTCACTATTGCAAGAGACCAG
AAAACTATTTTAAACATGTAAAAGAAGCCTGCATCATTCTGAATTTGAACATCGGTTCTGCATTACTGCT
GAAAGATGTCCTGCAGTCAGTGTCCGAGCACATTCCTGCCACAGCAGCCTTAAATGAAGTTGGGGTTTAC
AAACTGGCTCAACAAGACGTTGAAATTCTGCTTAATTTGAGAACAAATTGGCCTAACACTGGAAAATAA

Translation (792 aa):
MLAADDIGEVPAAPCCPESGDETKNTDVKSDVNTAAPAGSEQLSQGGSDDALLSYVSAFIEKEVGSDLKS
LKTLGKLIEQMTESKVKLEEQVLTISSEIPKRIQSALKDAEESKQLLDEFLEQEAPLFSSISSHLLMAQP
WMDDLGAMITQMEEIERHLAYLKWVSQTEELSDNIQQYLMTNSVPEAASLLVTMTELDIQLQESSCTHLL
SFMRATVKFWHKILKDKLTSDFEEVLAQLHWPFTSHTQSQTVGGSRPAGTPELYSSLDTLFCQLLKLQAS
DELLTEPKQLPEKYCLPASPPVTLPIQVMLAPLQKRFRYHFRGSRQTNVMSKPEWYLAQVLMWIGNHTQF
LDEKIQPILDKVGSAVNARLEFSRGLVMLILEKLASDIPCLLYDDSLFCHLVDEVLLFERELHTVHGYPS
TFASCMHILSEETCFQRWLTVERKFALQKMDSMLSSEAAWVSQYKDISDVDEMKVPDCAEVFMTLLLVIT
DRYKNLPTASRKLQFLELQKDLVDDFRIRLTQVMKEETRAALGFRYCAILNAVNYISAVLADWADNVFFL
QLQQAALEVFAENNVLSKLQLGQLASMESSVFDDMINLLERLKLDMLTRQVDHVFREVKDSAKLYKKERW
LSLPSQSEQAVMSLSSSACPLLLTLRDRLLQLEQQLCFSLFRIFWQMLAEKLDLYIYQEIILANHFNEGG
AAQLQFDMTRNLFPLFSHYCKRPENYFKHVKEACIILNLNIGSALLLKDVLQSVSEHIPATAALNEVGVY
KLAQQDVEILLNLRTNWPNTGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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