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Report for CCDS1441.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1441.2 Public Homo sapiens 1 LAX1 24 110 108 CCDS HistoryNCBI Gene:54900Re-query CCDS DB by CCDS ID:1441.2Re-query CCDS DB by GeneID:54900See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1441.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442561.7 ENSP00000406970.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000442561.7Link to Ensembl Protein Viewer:ENSP00000406970.2Re-query CCDS DB by Nucleotide ID:ENST00000442561Re-query CCDS DB by Protein ID:ENSP00000406970
Original member Current member NCBI NM_017773.4 NP_060243.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017773.4Link to Protein Sequence:NP_060243.2Re-query CCDS DB by Nucleotide ID:NM_017773Re-query CCDS DB by Protein ID:NP_060243Link to BLAST:NP_060243.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060243.2 398 Q8IWV1-1 398 100% 0 0

Chromosomal Locations for CCDS 1441.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 203765566 203765654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203770828 203770937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203771367 203771477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203772068 203772147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 203773875 203774681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGATGGTGTCACTCCAACCCTTTCGACAATCAGAGGGAGGACCTTGGAGTCCAGCACTCTGCATGTGA
CTCCCCGCAGCCTGGACAGAAATAAAGACCAGATCACCAACATCTTTTCCGGGTTTGCGGGACTCCTCGC
CATCCTCCTGGTCGTTGCGGTTTTCTGCATCTTGTGGAATTGGAATAAACGGAAGAAGCGACAAGTTCCT
TACCTCCGAGTTACCGTCATGCCCTTGCTGACTTTGCCACAAACCAGACAAAGAGCCAAAAATATTTATG
ACATCTTGCCTTGGCGACAGGAAGACCTGGGGAGACATGAGTCGAGGAGTATGCGCATTTTCAGTACTGA
GAGCCTCCTCTCCAGAAATTCTGAGAGCCCGGAGCATGTGCCCTCCCAAGCAGGCAATGCCTTCCAGGAG
CATACAGCCCACATCCATGCCACAGAGTACGCGGTGGGTATCTATGACAACGCCATGGTCCCCCAGATGT
GTGGGAACCTCACTCCCTCGGCACACTGCATCAATGTCAGAGCTTCCAGAGACTGCGCAAGCATTTCTTC
AGAGGATTCGCATGATTATGTCAATGTCCCCACAGCAGAAGAGATTGCTGAGACTCTAGCTTCTACCAAA
AGCCCTTCCAGAAATCTCTTTGTTCTTCCCAGTACCCAGAAGCTGGAGTTTACTGAGGAAAGAGATGAGG
GCTGTGGAGATGCTGGTGACTGCACCAGTTTGTATTCTCCAGGAGCTGAGGACAGTGATTCACTCAGCAA
TGGAGAAGGTTCTTCTCAGATCTCAAATGACTATGTCAACATGACAGGGTTGGATCTCAGTGCCATCCAG
GAAAGGCAGCTCTGGGTGGCTTTTCAGTGCTGCAGAGACTATGAAAATGTTCCAGCAGCAGATCCCAGTG
GAAGCCAGCAGCAGGCTGAGAAAGATGTGCCATCCTCAAACATAGGTCATGTCGAGGACAAGACAGATGA
TCCCGGGACCCATGTCCAATGTGTCAAAAGGACATTCCTTGCTTCAGGGGATTATGCAGACTTTCAGCCA
TTCACACAGAGTGAGGACAGTCAGATGAAACATAGAGAAGAGATGTCAAATGAGGACTCCAGTGACTATG
AAAATGTGCTAACTGCCAAGTTAGGAGGCAGGGACTCTGAGCAGGGGCCTGGCACTCAGCTCCTTCCTGA
TGAATGA

Translation (398 aa):
MDGVTPTLSTIRGRTLESSTLHVTPRSLDRNKDQITNIFSGFAGLLAILLVVAVFCILWNWNKRKKRQVP
YLRVTVMPLLTLPQTRQRAKNIYDILPWRQEDLGRHESRSMRIFSTESLLSRNSESPEHVPSQAGNAFQE
HTAHIHATEYAVGIYDNAMVPQMCGNLTPSAHCINVRASRDCASISSEDSHDYVNVPTAEEIAETLASTK
SPSRNLFVLPSTQKLEFTEERDEGCGDAGDCTSLYSPGAEDSDSLSNGEGSSQISNDYVNMTGLDLSAIQ
ERQLWVAFQCCRDYENVPAADPSGSQQQAEKDVPSSNIGHVEDKTDDPGTHVQCVKRTFLASGDYADFQP
FTQSEDSQMKHREEMSNEDSSDYENVLTAKLGGRDSEQGPGTQLLPDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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