NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10608.1 Public Homo sapiens 16 SCNN1G 24 110 108 CCDS HistoryNCBI Gene:6340Re-query CCDS DB by CCDS ID:10608.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300061.3 ENSP00000300061.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300061.3Link to Ensembl Protein Viewer:ENSP00000300061.2Re-query CCDS DB by Nucleotide ID:ENST00000300061Re-query CCDS DB by Protein ID:ENSP00000300061
Original member Current member NCBI NM_001039.4 NP_001030.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039.4Link to Protein Sequence:NP_001030.2Re-query CCDS DB by Nucleotide ID:NM_001039Re-query CCDS DB by Protein ID:NP_001030Link to BLAST:NP_001030.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030.2 649 P51170 649 100% 0 0

Chromosomal Locations for CCDS 10608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 23186272 23186588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23189371 23189671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23192352 23192542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23194171 23194274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23197264 23197427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23209750 23209848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23212034 23212151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23212678 23212756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23212837 23212894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23213102 23213163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23214712 23214787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23215089 23215469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGCACCCGGAGAGAAGATCAAAGCCAAAATCAAGAAGAATCTGCCCGTGACGGGCCCTCAGGCGCCGA
CCATTAAAGAGCTGATGCGGTGGTACTGCCTCAACACCAACACCCATGGCTGTCGCCGCATCGTGGTGTC
CCGCGGCCGTCTGCGCCGCCTCCTCTGGATCGGGTTCACACTGACTGCCGTGGCCCTCATCCTCTGGCAG
TGCGCCCTCCTCGTCTTCTCCTTCTATACTGTCTCAGTTTCCATCAAAGTCCACTTCCGGAAGCTGGATT
TTCCTGCAGTCACCATCTGCAACATCAACCCCTACAAGTACAGCACCGTTCGCCACCTTCTAGCTGACTT
GGAACAGGAGACCAGAGAGGCCCTGAAGTCCCTGTATGGCTTTCCAGAGTCCCGGAAGCGCCGAGAGGCG
GAGTCCTGGAACTCCGTCTCAGAGGGAAAGCAGCCTAGATTCTCCCACCGGATTCCGCTGCTGATCTTTG
ATCAGGATGAGAAGGGCAAGGCCAGGGACTTCTTCACAGGGAGGAAGCGGAAAGTCGGCGGTAGCATCAT
TCACAAGGCTTCAAATGTCATGCACATCGAGTCCAAGCAAGTGGTGGGATTCCAACTGTGCTCAAATGAC
ACCTCCGACTGTGCCACCTACACCTTCAGCTCGGGAATCAATGCCATTCAGGAGTGGTATAAGCTACACT
ACATGAACATCATGGCACAGGTGCCTCTGGAGAAGAAAATCAACATGAGCTATTCTGCTGAGGAGCTGCT
GGTGACCTGCTTCTTTGATGGAGTGTCCTGTGATGCCAGGAATTTCACGCTTTTCCACCACCCGATGCAT
GGGAATTGCTATACTTTCAACAACAGAGAAAATGAGACCATTCTCAGCACCTCCATGGGGGGCAGCGAAT
ATGGGCTGCAAGTCATTTTGTACATAAACGAAGAGGAATACAACCCATTCCTCGTGTCCTCCACTGGAGC
TAAGGTGATCATCCATCGGCAGGATGAGTATCCCTTCGTCGAAGATGTGGGAACAGAGATTGAGACAGCA
ATGGTCACCTCTATAGGAATGCACCTGACAGAGTCCTTCAAGCTGAGTGAGCCCTACAGTCAGTGCACGG
AGGACGGGAGTGACGTGCCAATCAGGAACATCTACAACGCTGCCTACTCGCTCCAGATCTGCCTTCATTC
ATGCTTCCAGACAAAGATGGTGGAGAAATGTGGGTGTGCCCAGTACAGCCAGCCTCTACCTCCTGCAGCC
AACTACTGCAACTACCAGCAGCACCCCAACTGGATGTATTGTTACTACCAACTGCATCGAGCCTTTGTCC
AGGAAGAGCTGGGCTGCCAGTCTGTGTGCAAGGAAGCCTGCAGCTTTAAAGAGTGGACACTAACCACAAG
CCTGGCACAATGGCCATCTGTGGTTTCGGAGAAGTGGTTGCTGCCTGTTCTCACTTGGGACCAAGGCCGG
CAAGTAAACAAAAAGCTCAACAAGACAGACTTGGCCAAACTCTTGATATTCTACAAAGACCTGAACCAGA
GATCCATCATGGAGAGCCCAGCCAACAGTATTGAGATGCTTCTGTCCAACTTCGGTGGCCAGCTGGGCCT
GTGGATGAGCTGCTCTGTTGTCTGCGTCATCGAGATCATCGAGGTCTTCTTCATTGACTTCTTCTCTATC
ATTGCCCGCCGCCAGTGGCAGAAAGCCAAGGAGTGGTGGGCCTGGAAACAGGCTCCCCCATGTCCAGAAG
CTCCCCGTAGCCCACAGGGCCAGGACAATCCAGCCCTGGATATAGACGATGACCTACCCACTTTCAACTC
TGCTTTGCACCTGCCTCCAGCCCTAGGAACCCAAGTGCCCGGCACACCGCCCCCCAAATACAATACCTTG
CGCTTGGAGAGGGCCTTTTCCAACCAGCTCACAGATACCCAGATGCTGGATGAGCTCTGA

Translation (649 aa):
MAPGEKIKAKIKKNLPVTGPQAPTIKELMRWYCLNTNTHGCRRIVVSRGRLRRLLWIGFTLTAVALILWQ
CALLVFSFYTVSVSIKVHFRKLDFPAVTICNINPYKYSTVRHLLADLEQETREALKSLYGFPESRKRREA
ESWNSVSEGKQPRFSHRIPLLIFDQDEKGKARDFFTGRKRKVGGSIIHKASNVMHIESKQVVGFQLCSND
TSDCATYTFSSGINAIQEWYKLHYMNIMAQVPLEKKINMSYSAEELLVTCFFDGVSCDARNFTLFHHPMH
GNCYTFNNRENETILSTSMGGSEYGLQVILYINEEEYNPFLVSSTGAKVIIHRQDEYPFVEDVGTEIETA
MVTSIGMHLTESFKLSEPYSQCTEDGSDVPIRNIYNAAYSLQICLHSCFQTKMVEKCGCAQYSQPLPPAA
NYCNYQQHPNWMYCYYQLHRAFVQEELGCQSVCKEACSFKEWTLTTSLAQWPSVVSEKWLLPVLTWDQGR
QVNKKLNKTDLAKLLIFYKDLNQRSIMESPANSIEMLLSNFGGQLGLWMSCSVVCVIEIIEVFFIDFFSI
IARRQWQKAKEWWAWKQAPPCPEAPRSPQGQDNPALDIDDDLPTFNSALHLPPALGTQVPGTPPPKYNTL
RLERAFSNQLTDTQMLDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH