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Report for CCDS11599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11599.1 Public Homo sapiens 17 CUEDC1 24 110 108 CCDS HistoryNCBI Gene:404093Re-query CCDS DB by CCDS ID:11599.1Re-query CCDS DB by GeneID:404093See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11599.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360238.6 ENSP00000353373.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360238.6Link to Ensembl Protein Viewer:ENSP00000353373.2Re-query CCDS DB by Nucleotide ID:ENST00000360238Re-query CCDS DB by Protein ID:ENSP00000353373
Original member Current member EBI ENST00000407144.6 ENSP00000384712.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407144.6Link to Ensembl Protein Viewer:ENSP00000384712.2Re-query CCDS DB by Nucleotide ID:ENST00000407144Re-query CCDS DB by Protein ID:ENSP00000384712
Original member Current member EBI ENST00000577830.6 ENSP00000462717.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000577830.6Link to Ensembl Protein Viewer:ENSP00000462717.1Re-query CCDS DB by Nucleotide ID:ENST00000577830Re-query CCDS DB by Protein ID:ENSP00000462717
Original member Current member NCBI NM_001271875.2 NP_001258804.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271875.2Link to Protein Sequence:NP_001258804.1Re-query CCDS DB by Nucleotide ID:NM_001271875Re-query CCDS DB by Protein ID:NP_001258804Link to BLAST:NP_001258804.1
Original member Current member NCBI NM_001292025.2 NP_001278954.1 Accepted alive Link to Nucleotide Sequence:NM_001292025.2Link to Protein Sequence:NP_001278954.1Re-query CCDS DB by Nucleotide ID:NM_001292025Re-query CCDS DB by Protein ID:NP_001278954Link to BLAST:NP_001278954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258804.1 386 Q9NWM3-1 386 100% 0 0
NP_001278954.1 386 Q9NWM3-1 386 100% 0 0

Chromosomal Locations for CCDS 11599.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57866477 57866544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57867357 57867415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57868150 57868243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57869122 57869193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57871286 57871369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57872663 57872855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57873591 57873717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57879611 57879738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57885229 57885564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGACCAGCCTGTTCCGCCGGAGCAGCAGCGGCAGCGGCGGGGGTGGCACCGCCGGGGCACGCGGGGGCG
GGGGAGGCACGGCCGCCCCCCAGGAGCTCAACAACAGCCGGCCTGCCCGCCAGGTGCGCCGCCTGGAGTT
CAACCAGGCCATGGACGACTTCAAGACCATGTTCCCCAACATGGATTACGACATCATCGAATGCGTGCTG
CGCGCCAACAGCGGCGCTGTGGACGCCACCATCGACCAGCTGCTGCAGATGAACCTGGAGGGCGGTGGCA
GCAGCGGCGGCGTCTATGAGGACAGCTCCGACTCGGAGGACAGCATCCCCCCGGAGATCTTGGAAAGGAC
TTTGGAACCTGATAGCTCGGATGAAGAGCCCCCACCTGTGTACTCCCCGCCAGCCTACCACATGCACGTG
TTCGACCGGCCCTACCCTCTGGCTCCCCCGACTCCGCCTCCCCGTATCGACGCGCTGGGCTCTGGAGCCC
CTACAAGCCAGAGACGCTATCGGAACTGGAACCCACCACTGCTGGGCAACCTTCCGGATGACTTTCTCCG
CATCCTGCCCCAGCAGCTGGACAGCATACAGGGTAACGCTGGGGGCCCCAAGCCTGGGAGTGGAGAGGGA
TGTCCACCTGCCATGGCTGGGCCAGGGCCCGGAGACCAGGAGAGCCGCTGGAAGCAGTACCTGGAGGACG
AGAGGATCGCGCTTTTCCTGCAGAACGAGGAGTTCATGAAGGAGCTGCAACGGAACCGCGACTTCCTCCT
CGCTCTGGAGAGAGATCGATTGAAATACGAATCCCAGAAATCTAAATCCAGCAGCGTGGCTGTCGGAAAC
GACTTTGGCTTTTCCTCTCCTGTCCCAGGAACTGGCGACGCCAACCCCGCTGTGTCTGAAGATGCCTTAT
TCAGGGACAAGCTGAAACACATGGGAAAGTCCACCCGGAGGAAACTGTTTGAACTTGCCCGAGCCTTCTC
AGAGAAGACCAAAATGAGGAAGTCAAAGAGGAAACACTTGTTGAAGCATCAGTCGCTGGGGGCTGCCGCG
TCAACAGCCAACCTCCTGGATGATGTGGAGGGCCACGCGTGTGATGAAGACTTCCGGGGCAGGCGTCAGG
AGGCACCCAAGGTGGAGGAAGGCCTGCGAGAAGGACAGTAA

Translation (386 aa):
MTSLFRRSSSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPNMDYDIIECVL
RANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHV
FDRPYPLAPPTPPPRIDALGSGAPTSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEG
CPPAMAGPGPGDQESRWKQYLEDERIALFLQNEEFMKELQRNRDFLLALERDRLKYESQKSKSSSVAVGN
DFGFSSPVPGTGDANPAVSEDALFRDKLKHMGKSTRRKLFELARAFSEKTKMRKSKRKHLLKHQSLGAAA
STANLLDDVEGHACDEDFRGRRQEAPKVEEGLREGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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