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Report for CCDS5799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5799.1 Public Homo sapiens 7 LRRC4 24 110 108 CCDS HistoryNCBI Gene:64101Re-query CCDS DB by CCDS ID:5799.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5799.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249363.4 ENSP00000249363.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249363.4Link to Ensembl Protein Viewer:ENSP00000249363.3Re-query CCDS DB by Nucleotide ID:ENST00000249363Re-query CCDS DB by Protein ID:ENSP00000249363
Original member Current member NCBI NM_022143.5 NP_071426.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022143.5Link to Protein Sequence:NP_071426.1Re-query CCDS DB by Nucleotide ID:NM_022143Re-query CCDS DB by Protein ID:NP_071426Link to BLAST:NP_071426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071426.1 653 Q9HBW1 653 100% 0 0

Chromosomal Locations for CCDS 5799.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128028679 128030640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGAAGCTCTTGTGGCAGGTAACTGTGCACCACCACACCTGGAATGCCATCCTGCTCCCGTTCGTCTACC
TCACGGCGCAAGTGTGGATTCTGTGTGCAGCCATCGCTGCTGCCGCCTCAGCCGGGCCCCAGAACTGCCC
CTCCGTCTGCTCGTGCAGTAACCAGTTCAGCAAGGTGGTGTGCACGCGCCGGGGCCTCTCCGAGGTCCCG
CAGGGTATTCCCTCGAACACCCGGTACCTCAACCTCATGGAGAACAACATCCAGATGATCCAGGCCGACA
CCTTCCGCCACCTCCACCACCTGGAGGTCCTGCAGTTGGGCAGGAACTCCATCCGGCAGATTGAGGTGGG
GGCCTTCAACGGCCTGGCCAGCCTCAACACCCTGGAGCTGTTCGACAACTGGCTGACAGTCATCCCTAGC
GGGGCCTTTGAATACCTGTCCAAGCTGCGGGAGCTCTGGCTTCGCAACAACCCCATCGAAAGCATCCCCT
CTTACGCCTTCAACCGGGTGCCCTCCCTCATGCGCCTGGACTTGGGGGAGCTCAAGAAGCTGGAGTATAT
CTCTGAGGGAGCTTTTGAGGGGCTGTTCAACCTCAAGTATCTGAACTTGGGCATGTGCAACATTAAAGAC
ATGCCCAATCTCACCCCCCTGGTGGGGCTGGAGGAGCTGGAGATGTCAGGGAACCACTTCCCTGAGATCA
GGCCTGGCTCCTTCCATGGCCTGAGCTCCCTCAAGAAGCTCTGGGTCATGAACTCACAGGTCAGCCTGAT
TGAGCGGAATGCTTTTGACGGGCTGGCTTCACTTGTGGAACTCAACTTGGCCCACAATAACCTCTCTTCT
TTGCCCCATGACCTCTTTACCCCGCTGAGGTACCTGGTGGAGTTGCATCTACACCACAACCCTTGGAACT
GTGATTGTGACATTCTGTGGCTAGCCTGGTGGCTTCGAGAGTATATACCCACCAATTCCACCTGCTGTGG
CCGCTGTCATGCTCCCATGCACATGCGAGGCCGCTACCTCGTGGAGGTGGACCAGGCCTCCTTCCAGTGC
TCTGCCCCCTTCATCATGGACGCACCTCGAGACCTCAACATTTCTGAGGGTCGGATGGCAGAACTTAAGT
GTCGGACTCCCCCTATGTCCTCCGTGAAGTGGTTGCTGCCCAATGGGACAGTGCTCAGCCACGCCTCCCG
CCACCCAAGGATCTCTGTCCTCAACGACGGCACCTTGAACTTTTCCCACGTGCTGCTTTCAGACACTGGG
GTGTACACATGCATGGTGACCAATGTTGCAGGCAACTCCAACGCCTCGGCCTACCTCAATGTGAGCACGG
CTGAGCTTAACACCTCCAACTACAGCTTCTTCACCACAGTAACAGTGGAGACCACGGAGATCTCGCCTGA
GGACACAACGCGAAAGTACAAGCCTGTTCCTACCACGTCCACTGGTTACCAGCCGGCATATACCACCTCT
ACCACGGTGCTCATTCAGACTACCCGTGTGCCCAAGCAGGTGGCAGTACCCGCGACAGACACCACTGACA
AGATGCAGACCAGCCTGGATGAAGTCATGAAGACCACCAAGATCATCATTGGCTGCTTTGTGGCAGTGAC
TCTGCTAGCTGCCGCCATGTTGATTGTCTTCTATAAACTTCGTAAGCGGCACCAGCAGCGGAGTACAGTC
ACAGCCGCCCGGACTGTTGAGATAATCCAGGTGGACGAAGACATCCCAGCAGCAACATCCGCAGCAGCAA
CAGCAGCTCCGTCCGGTGTATCAGGTGAGGGGGCAGTAGTGCTGCCCACAATTCATGACCATATTAACTA
CAACACCTACAAACCAGCACATGGGGCCCACTGGACAGAAAACAGCCTGGGGAACTCTCTGCACCCCACA
GTCACCACTATCTCTGAACCTTATATAATTCAGACCCATACCAAGGACAAGGTACAGGAAACTCAAATAT
GA

Translation (653 aa):
MKLLWQVTVHHHTWNAILLPFVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVP
QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS
GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD
MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS
LPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQC
SAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTG
VYTCMVTNVAGNSNASAYLNVSTAELNTSNYSFFTTVTVETTEISPEDTTRKYKPVPTTSTGYQPAYTTS
TTVLIQTTRVPKQVAVPATDTTDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTV
TAARTVEIIQVDEDIPAATSAAATAAPSGVSGEGAVVLPTIHDHINYNTYKPAHGAHWTENSLGNSLHPT
VTTISEPYIIQTHTKDKVQETQI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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