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Report for CCDS53539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53539.1 Public Homo sapiens 10 NPFFR1 24 110 108 CCDS HistoryNCBI Gene:64106Re-query CCDS DB by CCDS ID:53539.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000277942.7 ENSP00000277942.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000277942.7Link to Ensembl Protein Viewer:ENSP00000277942.5Re-query CCDS DB by Nucleotide ID:ENST00000277942Re-query CCDS DB by Protein ID:ENSP00000277942
Original member Current member NCBI NM_022146.5 NP_071429.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022146.5Link to Protein Sequence:NP_071429.1Re-query CCDS DB by Nucleotide ID:NM_022146Re-query CCDS DB by Protein ID:NP_071429Link to BLAST:NP_071429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071429.1 430 Q9GZQ6 430 100% 0 0

Chromosomal Locations for CCDS 53539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70254957 70255827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70260640 70260739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70266077 70266391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70283670 70283676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGAGGGGGAGCCCTCCCAGCCTCCCAACAGCAGTTGGCCCCTAAGTCAGAATGGGACTAACACTGAGG
CCACCCCGGCTACAAACCTCACCTTCTCCTCCTACTATCAGCACACCTCCCCTGTGGCGGCCATGTTCAT
TGTGGCCTATGCGCTCATCTTCCTGCTCTGCATGGTGGGCAACACCCTGGTCTGTTTCATCGTGCTCAAG
AACCGGCACATGCATACTGTCACCAACATGTTCATCCTCAACCTGGCTGTCAGTGACCTGCTGGTGGGCA
TCTTCTGCATGCCCACCACCCTTGTGGACAACCTCATCACTGGGTGGCCCTTCGACAATGCCACATGCAA
GATGAGCGGCTTGGTGCAGGGCATGTCTGTGTCGGCTTCCGTTTTCACACTGGTGGCCATTGCTGTGGAA
AGGTTCCGCTGCATCGTGCACCCTTTCCGCGAGAAGCTGACCCTGCGGAAGGCGCTCGTCACCATCGCCG
TCATCTGGGCCCTGGCGCTGCTCATCATGTGTCCCTCGGCCGTCACGCTGACCGTCACCCGTGAGGAGCA
CCACTTCATGGTGGACGCCCGCAACCGCTCCTACCCGCTCTACTCCTGCTGGGAGGCCTGGCCCGAGAAG
GGCATGCGCAGGGTCTACACCACTGTGCTCTTCTCGCACATCTACCTGGCGCCGCTGGCGCTCATCGTGG
TCATGTACGCCCGCATCGCGCGCAAGCTCTGCCAGGCCCCGGGCCCGGCCCCCGGGGGCGAGGAGGCTGC
GGACCCGCGAGCATCGCGGCGCAGAGCGCGCGTGGTGCACATGCTGGTCATGGTGGCGCTGTTCTTCACG
CTGTCCTGGCTGCCGCTCTGGGCGCTGCTGCTGCTCATCGACTACGGGCAGCTCAGCGCGCCGCAGCTGC
ACCTGGTCACCGTCTACGCCTTCCCCTTCGCGCACTGGCTGGCCTTCTTCAACAGCAGCGCCAACCCCAT
CATCTACGGCTACTTCAACGAGAACTTCCGCCGCGGCTTCCAGGCCGCCTTCCGCGCCCGCCTCTGCCCG
CGCCCGTCGGGGAGCCACAAGGAGGCCTACTCCGAGCGGCCCGGCGGGCTTCTGCACAGGCGGGTCTTCG
TGGTGGTGCGGCCCAGCGACTCCGGGCTGCCCTCTGAGTCGGGCCCTAGCAGTGGGGCCCCCAGGCCCGG
CCGCCTCCCGCTGCGGAATGGGCGGGTGGCTCACCACGGCTTGCCCAGGGAAGGGCCTGGCTGCTCCCAC
CTGCCCCTCACCATTCCAGCCTGGGATATCTGA

Translation (430 aa):
MEGEPSQPPNSSWPLSQNGTNTEATPATNLTFSSYYQHTSPVAAMFIVAYALIFLLCMVGNTLVCFIVLK
NRHMHTVTNMFILNLAVSDLLVGIFCMPTTLVDNLITGWPFDNATCKMSGLVQGMSVSASVFTLVAIAVE
RFRCIVHPFREKLTLRKALVTIAVIWALALLIMCPSAVTLTVTREEHHFMVDARNRSYPLYSCWEAWPEK
GMRRVYTTVLFSHIYLAPLALIVVMYARIARKLCQAPGPAPGGEEAADPRASRRRARVVHMLVMVALFFT
LSWLPLWALLLLIDYGQLSAPQLHLVTVYAFPFAHWLAFFNSSANPIIYGYFNENFRRGFQAAFRARLCP
RPSGSHKEAYSERPGGLLHRRVFVVVRPSDSGLPSESGPSSGAPRPGRLPLRNGRVAHHGLPREGPGCSH
LPLTIPAWDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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