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Report for CCDS53693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53693.1 Public Homo sapiens 11 TRIM64B 24 110 108 CCDS HistoryNCBI Gene:642446Re-query CCDS DB by CCDS ID:53693.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53693.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329862.7 ENSP00000332969.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329862.7Link to Ensembl Protein Viewer:ENSP00000332969.6Re-query CCDS DB by Nucleotide ID:ENST00000329862Re-query CCDS DB by Protein ID:ENSP00000332969
Original member Current member NCBI NM_001164397.3 NP_001157869.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164397.3Link to Protein Sequence:NP_001157869.1Re-query CCDS DB by Nucleotide ID:NM_001164397Re-query CCDS DB by Protein ID:NP_001157869Link to BLAST:NP_001157869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157869.1 449 A6NI03 449 100% 0 0

Chromosomal Locations for CCDS 53693.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 89870621 89871114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89872215 89872312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89873268 89873290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89874049 89874279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89874978 89875073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89875610 89876017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGATTCAGACGACCTGCAAGTCTTCCAGAATGAGCTCATTTGCTGCATTTGCGTGAACTACTTCATAG
ATCCGGTCACCATTGACTGTGGGCACAGCTTTTGCAGGCCCTGCCTCTGCCTCTGCTCAGAAGAAGGCAG
AGCACCAATGCGCTGCCCTTCGTGCAGAAAAACCTCAGAGAAGCCCAACTTCAACACCAATCTGGTACTC
AAAAAGCTGTCTTCCCTAGCCAGACAGACCAGACCTCAGAACATCAACAGCTCAGACAATATCTGTGTGC
TCCATGAGGAGACTAAGGAGCTCTTCTGTGAGGCTGACAAGAGATTGCTCTGTGGGCCCTGCTCTGAGTC
ACCAGAGCACATGGCTCACAGCCACAGCCCAATAGGATGGGCTGCTGAGGAATGCAGGGAGAAACTTATA
AAGGAAATGGACTATTTATGGGAAATCAATCAAGAGACAAGAAACAATCTAAATCAGGAAACTAGCACAT
TTCATTCGTTAAAGGACTATGTGTCAGTAAGGAAGAGGATAATCACTATTCAATATCAAAAGATGCCTAT
ATTTCTCGATGAGGAGGAGCAACGGCATCTGCAGGCACTGGAAAGAGAAGCAGAAGAGCTTTTCCAACAA
CTACAAGACAGTCAAGTGAGAATGACCCAACATTTAGAAAGGATGAAAGACATGTACAGAGAGCTGTGGG
AGACATGCCACATGCCTGACGTGGTGCTGCTCCAGGATGTGAGAAATGTATCAGCAAGGACTGATTTGGC
ACAGATGCAAAAGCCCCAGCCAGTGAACCCAGAGCTCACTTCATGGTGCATAACTGGAGTCCTAGACATG
CTCAACAACTTCAGAGTGGATAGTGCTCTGAGCACGGAAATGATTCCTTGCTATATAAGCCTTTCTGAGG
ATGTGAGATATGTGATATTTGGAGATGACCATCTCAGTGCTCCCACGGATCCCCAGGGAGTGGACAGCTT
TGCTGTGTGGGGAGCGCAAGCATTCACCTCCGGCAAGCATTACTGGGAGGTGGATGTGACCCTCTCCTCC
AACTGGATTCTGGGAGTCTGTCGAGATTCCAGGACTGCAGATGCCAATTTCGTTATTGATTCTGATGAAA
GATTTTTTTTAATTTCCTCAAAGAGGAGCAATCACTATAGTCTCTCCACCAACTCTCCACCTTTAATTCA
GTATGTGCAAAGGCCTCTGGGTCGAGTTGGGGTGTTTCTGGATTATGATAATGGATCTGTGAGTTTTTTT
GATGTTTCTAAAGGTTCTCTTATCTATGGTTTTCCTCCTTCCTCCTTCTCTTCCCCTCTGAGGCCTTTCT
TTTGCTTTGGTTGTACATGA

Translation (449 aa):
MDSDDLQVFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSEEGRAPMRCPSCRKTSEKPNFNTNLVL
KKLSSLARQTRPQNINSSDNICVLHEETKELFCEADKRLLCGPCSESPEHMAHSHSPIGWAAEECREKLI
KEMDYLWEINQETRNNLNQETSTFHSLKDYVSVRKRIITIQYQKMPIFLDEEEQRHLQALEREAEELFQQ
LQDSQVRMTQHLERMKDMYRELWETCHMPDVVLLQDVRNVSARTDLAQMQKPQPVNPELTSWCITGVLDM
LNNFRVDSALSTEMIPCYISLSEDVRYVIFGDDHLSAPTDPQGVDSFAVWGAQAFTSGKHYWEVDVTLSS
NWILGVCRDSRTADANFVIDSDERFFLISSKRSNHYSLSTNSPPLIQYVQRPLGRVGVFLDYDNGSVSFF
DVSKGSLIYGFPPSSFSSPLRPFFCFGCT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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