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Report for CCDS53694.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53694.1 Public Homo sapiens 11 TRIM49C 24 110 108 CCDS HistoryNCBI Gene:642612Re-query CCDS DB by CCDS ID:53694.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53694.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448984.1 ENSP00000388299.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000448984.1Link to Ensembl Protein Viewer:ENSP00000388299.1Re-query CCDS DB by Nucleotide ID:ENST00000448984Re-query CCDS DB by Protein ID:ENSP00000388299
Original member Current member NCBI NM_001195234.1 NP_001182163.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195234.1Link to Protein Sequence:NP_001182163.1Re-query CCDS DB by Nucleotide ID:NM_001195234Re-query CCDS DB by Protein ID:NP_001182163Link to BLAST:NP_001182163.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182163.1 452 P0CI26 452 100% 0 0

Chromosomal Locations for CCDS 53694.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 90035212 90035622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90035888 90035983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90037749 90037979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90038693 90038715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90039865 90039962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90041051 90041550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGAATTCTGGAATCTTACAGGTCTTTCAGGGGGAACTCATCTGCCCCCTGTGCATGAACTACTTCATAG
ACCCGGTCACCATAGACTGTGGGCACAGCTTTTGCAGGCCTTGTTTCTACCTCAACTGGCAAGACATCCC
ATTTCTTGTCCAGTGCTCTGAATGCACAAAGTCAACAGAGCAGATAAACCTCAAAACCAACATTCATTTG
AAGAAGATGGCTTCTCTTGCCAGAAAAGTCAGTCTCTGGCTATTCCTGAGCTCTGAGGAGCAAATGTGTG
GCACTCACAGGGAGACAAAGAAGATATTCTGTGAAGTGGACAGGAGCCTGCTCTGTTTGCTGTGCTCCAG
CTCTCAGGAGCACCGGTATCACAGACACCGTCCCATTGAGTGGGCTGCTGAGGAACACCGGGAGAAGCTT
TTACAGAAAATGCAGTCTTTGTGGGAAAAAGCTTGTGAAAATCACAGAAACCTGAATGTGGAAACCACCA
GAACCAGATGCTGGAAGGATTATGTGAATTTAAGGCTAGAAGCAATTAGAGCTGAGTATCAGAAGATGCC
TGCATTTCATCATGAAGAAGAAAAACATAATTTGGAGATGCTGAAAAAGAAGGGGAAAGAAATTTTTCAT
CGACTTCATTTAAGTAAAGCCAAAATGGCTCATAGGATGGAGATTTTAAGAGGAATGTATGAGGAGCTGA
ACGAAATGTGCCATAAACCAGATGTGGAGCTACTTCAGGCTTTTGGAGACATATTACACAGGAGTGAGTC
CGTGCTGCTGCACATGCCCCAGCCTCTGAATCCAGAGCTCAGTGCAGGGCCCATCACTGGACTGAGGGAC
AGGCTCAACCAATTCCGAGTGCATATTACTCTGCATCATGAAGAAGCCAACAGTGATATCTTTCTGTATG
AAATTTTGAGAAGCATGTGTATTGGATGTGACCATCAAGATGTACCCTATTTCACTGCAACACCTAGAAG
TTTTCTTGCATGGGGTGTTCAGACTTTCACCTCGGGCAAATATTACTGGGAGGTCCATGTAGGGGACTCC
TGGAATTGGGCTTTTGGTGTCTGTAATATGTATCGGAAGGAGAAGAATCAGAATGAGAAGATAGATGGAA
AGGAGGGACTCTTTCTTCTTGGGTGTATTAAGAATGACATTCAATGCAGTCTCTTTACCACCTCCCCACT
TATGCTGCAATATATCCCAAAACCTACCAGCCGAGTAGGATTATTCCTGGATTGTGAGGCTAAGACTGTG
AGCTTTGTTGATGTTAATCAAAGCTCCCTAATATACACCATCCCTAATTGCTCTTTCTCACCTCCTCTCA
GGCCTATCTTTTGCTGTATTCACTTCTGA

Translation (452 aa):
MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQDIPFLVQCSECTKSTEQINLKTNIHL
KKMASLARKVSLWLFLSSEEQMCGTHRETKKIFCEVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKL
LQKMQSLWEKACENHRNLNVETTRTRCWKDYVNLRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFH
RLHLSKAKMAHRMEILRGMYEELNEMCHKPDVELLQAFGDILHRSESVLLHMPQPLNPELSAGPITGLRD
RLNQFRVHITLHHEEANSDIFLYEILRSMCIGCDHQDVPYFTATPRSFLAWGVQTFTSGKYYWEVHVGDS
WNWAFGVCNMYRKEKNQNEKIDGKEGLFLLGCIKNDIQCSLFTTSPLMLQYIPKPTSRVGLFLDCEAKTV
SFVDVNQSSLIYTIPNCSFSPPLRPIFCCIHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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