NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43779.1 Public Homo sapiens 8 SCX 24 110 108 CCDS HistoryNCBI Gene:642658Re-query CCDS DB by CCDS ID:43779.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43779.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000567180.3 ENSP00000476384.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000567180.3Link to Ensembl Protein Viewer:ENSP00000476384.1Re-query CCDS DB by Nucleotide ID:ENST00000567180Re-query CCDS DB by Protein ID:ENSP00000476384
Original member Current member NCBI NM_001080514.3 NP_001073983.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080514.3Link to Protein Sequence:NP_001073983.1Re-query CCDS DB by Nucleotide ID:NM_001080514Re-query CCDS DB by Protein ID:NP_001073983Link to BLAST:NP_001073983.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073983.1 201 Q7RTU7 201 100% 0 0

Chromosomal Locations for CCDS 43779.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144266614 144267180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144268104 144268142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGTCCTTCGCCACGCTGCGCCCGGCGCCGCCGGGCCGCTACCTGTACCCCGAGGTGAGCCCGCTGTCGG
AGGACGAGGACCGCGGCAGCGACAGCTCGGGCTCCGACGAGAAACCCTGTCGCGTGCACGCGGCGCGCTG
CGGCCTCCAGGGCGCCCGGCGGAGGGCGGGGGGCCGGCGGGCCGGGGGCGGGGGGCCAGGGGGCCGGCCA
GGCCGTGAGCCCCGGCAGCGGCACACGGCGAACGCGCGCGAGCGAGACCGCACCAACAGCGTGAACACGG
CCTTCACGGCGCTGCGCACGCTGATCCCCACCGAGCCCGCCGACCGCAAGCTCTCCAAGATTGAGACGCT
GCGCCTGGCCTCCAGCTACATCTCGCACCTGGGCAACGTGCTGCTGGCGGGCGAGGCCTGCGGCGACGGA
CAGCCCTGCCACTCCGGGCCCGCCTTCTTCCACGCGGCGCGCGCCGGCAGCCCCCCGCCGCCGCCCCCGC
CGCCTCCCGCCCGCGACGGCGAGAACACCCAGCCCAAACAGATCTGCACCTTCTGCCTCAGCAACCAGAG
AAAGTTGAGCAAGGACCGCGACAGAAAGACAGCGATTCGCAGTTAG

Translation (201 aa):
MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRP
GREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEACGDG
QPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICTFCLSNQRKLSKDRDRKTAIRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH