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Report for CCDS11749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11749.1 Public Homo sapiens 17 SRSF2 24 110 108 CCDS HistoryNCBI Gene:6427Re-query CCDS DB by CCDS ID:11749.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11749.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359995.10 ENSP00000353089.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359995.10Link to Ensembl Protein Viewer:ENSP00000353089.5Re-query CCDS DB by Nucleotide ID:ENST00000359995Re-query CCDS DB by Protein ID:ENSP00000353089
Original member Current member EBI ENST00000392485.2 ENSP00000376276.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392485.2Link to Ensembl Protein Viewer:ENSP00000376276.2Re-query CCDS DB by Nucleotide ID:ENST00000392485Re-query CCDS DB by Protein ID:ENSP00000376276
Original member Current member EBI ENST00000452355.7 ENSP00000391278.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452355.7Link to Ensembl Protein Viewer:ENSP00000391278.3Re-query CCDS DB by Nucleotide ID:ENST00000452355Re-query CCDS DB by Protein ID:ENSP00000391278
Original member Current member EBI ENST00000585202.5 ENSP00000462425.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000585202.5Link to Ensembl Protein Viewer:ENSP00000462425.1Re-query CCDS DB by Nucleotide ID:ENST00000585202Re-query CCDS DB by Protein ID:ENSP00000462425
Original member Current member NCBI NM_001195427.2 NP_001182356.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195427.2Link to Protein Sequence:NP_001182356.1Re-query CCDS DB by Nucleotide ID:NM_001195427Re-query CCDS DB by Protein ID:NP_001182356Link to BLAST:NP_001182356.1
Original member NCBI NM_003016.4 NP_003007.2 Updated not alive Link to Nucleotide Sequence:NM_003016.4Link to Protein Sequence:NP_003007.2Re-query CCDS DB by Nucleotide ID:NM_003016Re-query CCDS DB by Protein ID:NP_003007
Current member NCBI NM_003016.5 NP_003007.2 Accepted alive Link to Nucleotide Sequence:NM_003016.5Link to Protein Sequence:NP_003007.2Re-query CCDS DB by Nucleotide ID:NM_003016Re-query CCDS DB by Protein ID:NP_003007Link to BLAST:NP_003007.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182356.1 221 Q01130-1 221 100% 0 0
NP_003007.2 221 Q01130-1 221 100% 0 0

Chromosomal Locations for CCDS 11749.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 76736161 76736464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76736799 76737160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGAGCTACGGCCGCCCCCCTCCCGATGTGGAGGGTATGACCTCCCTCAAGGTGGACAACCTGACCTACC
GCACCTCGCCCGACACGCTGAGGCGCGTCTTCGAGAAGTACGGGCGCGTCGGCGACGTGTACATCCCGCG
GGACCGCTACACCAAGGAGTCCCGCGGCTTCGCCTTCGTTCGCTTTCACGACAAGCGCGACGCTGAGGAC
GCTATGGATGCCATGGACGGGGCCGTGCTGGACGGCCGCGAGCTGCGGGTGCAAATGGCGCGCTACGGCC
GCCCCCCGGACTCACACCACAGCCGCCGGGGACCGCCACCCCGCAGGTACGGGGGCGGTGGCTACGGACG
CCGGAGCCGCAGCCCTAGGCGGCGTCGCCGCAGCCGATCCCGGAGTCGGAGTCGTTCCAGGTCTCGCAGC
CGATCTCGCTACAGCCGCTCGAAGTCTCGGTCCCGCACTCGTTCTCGATCTCGGTCGACCTCCAAGTCCA
GATCCGCACGAAGGTCCAAGTCCAAGTCCTCGTCGGTCTCCAGATCTCGTTCGCGGTCCAGGTCCCGGTC
TCGGTCCAGGAGTCCTCCCCCAGTGTCCAAGAGGGAATCCAAATCCAGGTCGCGATCGAAGAGTCCCCCC
AAGTCTCCTGAAGAGGAAGGAGCGGTGTCCTCTTAA

Translation (221 aa):
MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED
AMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRS
RSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPP
KSPEEEGAVSS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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