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Report for CCDS32344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32344.1 Public Homo sapiens 16 RHBDF1 24 110 108 CCDS HistoryNCBI Gene:64285Re-query CCDS DB by CCDS ID:32344.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32344.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262316.10 ENSP00000262316.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262316.10Link to Ensembl Protein Viewer:ENSP00000262316.5Re-query CCDS DB by Nucleotide ID:ENST00000262316Re-query CCDS DB by Protein ID:ENSP00000262316
Original member Current member NCBI NM_022450.5 NP_071895.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022450.5Link to Protein Sequence:NP_071895.3Re-query CCDS DB by Nucleotide ID:NM_022450Re-query CCDS DB by Protein ID:NP_071895Link to BLAST:NP_071895.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071895.3 855 Q96CC6 855 100% 0 0

Chromosomal Locations for CCDS 32344.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58340 58759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58974 59127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59249 59349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59419 59494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59732 59826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60216 60279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60439 60539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 61120 61281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 61385 61459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 61585 61696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 61798 62052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62538 62695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62775 62897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62973 63182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63587 63800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64699 64829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64899 65015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGAGTGAGGCCCGCAGGGACAGCACGAGCAGCCTGCAGCGCAAGAAGCCACCCTGGCTAAAGCTGGACA
TTCCCTCTGCGGTGCCCCTGACGGCAGAAGAGCCCAGCTTCCTGCAGCCCCTGAGGCGACAGGCTTTCCT
GAGGAGTGTGAGTATGCCAGCCGAGACAGCCCACATCTCTTCACCCCACCATGAGCTCCGGCGGCCGGTG
CTGCAACGCCAGACGTCCATCACACAGACCATCCGCAGGGGGACCGCCGACTGGTTTGGAGTGAGCAAGG
ACAGTGACAGCACCCAGAAATGGCAGCGCAAGAGCATCCGTCACTGCAGCCAGCGCTACGGGAAGCTGAA
GCCCCAGGTCCTCCGGGAGCTGGACCTGCCCAGCCAGGACAACGTGTCGCTGACCAGCACCGAGACGCCA
CCCCCACTCTACGTGGGGCCATGCCAGCTGGGCATGCAGAAGATCATAGACCCCCTGGCCCGTGGCCGTG
CCTTCCGTGTGGCAGATGACACTGCGGAAGGCCTGAGTGCCCCACACACTCCCGTCACGCCGGGTGCTGC
CTCCCTCTGCTCCTTCTCCAGCTCCCGCTCAGGTTTCCACCGGCTCCCGCGGCGGCGCAAGCGAGAGTCG
GTGGCCAAGATGAGCTTCCGGGCGGCCGCAGCGCTGATGAAAGGCCGCTCCGTTAGGGATGGCACCTTTC
GCCGGGCACAGCGTCGAAGCTTCACTCCAGCTAGCTTTCTGGAGGAGGACACAACTGATTTCCCCGATGA
GCTGGACACATCCTTCTTTGCCCGGGAAGGTATCCTCCATGAAGAGCTGTCCACATACCCGGATGAAGTT
TTCGAGTCCCCATCGGAGGCAGCGCTAAAGGACTGGGAGAAGGCACCGGAGCAGGCGGACCTCACCGGCG
GGGCCCTGGACCGCAGCGAGCTTGAGCGCAGCCACCTGATGCTGCCCTTGGAGCGAGGCTGGCGGAAGCA
GAAGGAGGGCGCCGCAGCCCCGCAGCCCAAGGTGCGGCTCCGACAGGAGGTGGTGAGCACCGCGGGGCCG
CGACGGGGCCAGCGTATCGCGGTGCCGGTGCGCAAGCTCTTCGCCCGGGAGAAGCGGCCGTATGGGCTGG
GCATGGTGGGACGGCTCACCAACCGCACCTACCGCAAGCGCATCGACAGCTTCGTCAAGCGCCAGATCGA
GGACATGGACGACCACAGGCCCTTCTTCACCTACTGGCTTACCTTCGTGCACTCGCTCGTCACCATCCTA
GCCGTGTGCATCTATGGCATCGCGCCCGTGGGCTTCTCGCAGCATGAGACGGTGGACTCGGTGCTGCGGA
ACCGCGGGGTCTACGAGAACGTCAAGTACGTGCAGCAGGAGAACTTCTGGATCGGGCCCAGCTCGGAGGC
CCTCATCCACCTGGGCGCCAAGTTTTCGCCCTGCATGCGCCAGGACCCGCAGGTGCACAGCTTCATTCGC
TCGGCGCGCGAGCGCGAGAAGCACTCCGCCTGCTGCGTGCGCAACGACAGGTCGGGCTGCGTGCAGACCT
CGGAGGAGGAGTGCTCGTCCACGCTGGCAGTGTGGGTGAAGTGGCCCATCCATCCCAGCGCCCCAGAGCT
TGCGGGCCACAAGAGACAGTTTGGCTCTGTCTGCCACCAGGATCCCAGGGTGTGTGATGAGCCCTCCTCC
GAAGACCCTCATGAGTGGCCAGAAGACATCACCAAGTGGCCGATCTGCACCAAAAACAGCGCTGGGAACC
ACACCAACCATCCCCACATGGACTGTGTCATCACAGGACGGCCCTGCTGCATTGGCACCAAGGGCAGGTG
TGAGATCACCTCCCGGGAGTACTGTGACTTCATGAGGGGCTACTTCCATGAGGAGGCCACGCTCTGCTCT
CAGGTGCACTGCATGGATGATGTGTGTGGGCTCCTGCCTTTTCTCAACCCCGAGGTGCCTGACCAGTTCT
ACCGCCTGTGGCTATCCCTCTTCCTGCACGCCGGGATCTTGCACTGCCTGGTGTCCATCTGCTTCCAGAT
GACTGTCCTGCGGGACCTGGAGAAGCTGGCAGGCTGGCACCGCATAGCCATCATCTACCTGCTGAGTGGT
GTCACCGGCAACCTGGCCAGTGCCATCTTCCTGCCATACCGAGCAGAGGTGGGTCCTGCTGGCTCCCAGT
TCGGCATCCTGGCCTGCCTCTTCGTGGAGCTCTTCCAGAGCTGGCAGATCCTGGCGCGGCCCTGGCGTGC
CTTCTTCAAGCTGCTGGCTGTGGTGCTCTTCCTCTTCACCTTTGGGCTGCTGCCGTGGATTGACAACTTT
GCCCACATCTCAGGGTTCATCAGTGGCCTCTTCCTCTCCTTCGCCTTCTTGCCCTACATCAGCTTTGGCA
AGTTCGACCTGTACCGGAAACGCTGCCAGATCATCATCTTTCAGGTGGTCTTCCTGGGCCTCCTGGCTGG
CCTGGTGGTCCTCTTCTACGTCTATCCTGTCCGCTGTGAGTGGTGTGAGTTCCTCACCTGCATCCCCTTC
ACTGACAAGTTCTGTGAGAAGTACGAACTGGACGCTCAGCTCCACTGA

Translation (855 aa):
MSEARRDSTSSLQRKKPPWLKLDIPSAVPLTAEEPSFLQPLRRQAFLRSVSMPAETAHISSPHHELRRPV
LQRQTSITQTIRRGTADWFGVSKDSDSTQKWQRKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTSTETP
PPLYVGPCQLGMQKIIDPLARGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSSRSGFHRLPRRRKRES
VAKMSFRAAAALMKGRSVRDGTFRRAQRRSFTPASFLEEDTTDFPDELDTSFFAREGILHEELSTYPDEV
FESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGAAAPQPKVRLRQEVVSTAGP
RRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSFVKRQIEDMDDHRPFFTYWLTFVHSLVTIL
AVCIYGIAPVGFSQHETVDSVLRNRGVYENVKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFIR
SAREREKHSACCVRNDRSGCVQTSEEECSSTLAVWVKWPIHPSAPELAGHKRQFGSVCHQDPRVCDEPSS
EDPHEWPEDITKWPICTKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHEEATLCS
QVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSG
VTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNF
AHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYVYPVRCEWCEFLTCIPF
TDKFCEKYELDAQLH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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