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Report for CCDS61578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61578.1 Public Homo sapiens 15 GOLGA8N 24 110 108 CCDS HistoryNCBI Gene:643699Re-query CCDS DB by CCDS ID:61578.1See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 61578.1
The exon combination of this CCDS representation is inferred. It is supported by partial transcript alignments and by paralogous golgin A8 family alignments.

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 61578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448387.6 ENSP00000398454.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448387.6Link to Ensembl Protein Viewer:ENSP00000398454.2Re-query CCDS DB by Nucleotide ID:ENST00000448387Re-query CCDS DB by Protein ID:ENSP00000398454
Original member Current member NCBI NM_001282494.2 NP_001269423.1 Accepted alive Link to Nucleotide Sequence:NM_001282494.2Link to Protein Sequence:NP_001269423.1Re-query CCDS DB by Nucleotide ID:NM_001282494Re-query CCDS DB by Protein ID:NP_001269423Link to BLAST:NP_001269423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269423.1 632 F8WBI6 632 100% 0 0

Chromosomal Locations for CCDS 61578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 32593554 32593601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32595268 32595387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32596278 32596337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32596519 32596599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32597451 32597489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32597752 32597799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32597888 32597972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32598068 32598177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32599227 32599313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32599420 32599527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32599723 32599810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32600187 32600443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32600699 32600767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32602013 32602088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32602520 32602611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32603186 32603286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32603369 32603466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32603562 32603717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32603803 32603978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGCAGAAGAAACTCAACACAACAAATTGGCTGCAGCCAAGAAAAAGTTAAAAGAATATTGGCAGAAAA
ACAGACCTAGAGTTCCAGCAGGAGTGAACAGGAACAGGAAAACAAATGGCAGTATCCCTGAGACAGCCAC
TTCCGGTGGTTGCCAGCCACCTGGGGATTCAGCAACAGGTTTCCACAGGGAAGGCCCTACATCATCTGCT
ACCCTGAAAGATCTGGAGAGCCCGTGCCAAGAACGAGCAGTAGTCCTGGATTCAACGTCCGTAAAAATCA
GTCGACTGAAGAACACCATCAAATCTTTGAAACAACAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGA
AAAGAAAGCAAACAACGAGAGACAGAAAGCCGAAAGGGAGCTAGAGGTTCAAATCCAGACATTGATCATA
CAGAAAGAGGAACTAAATACGGACCTGTACCACATGGAACGTTCTCTCAGATACTTTGAAGAAGAGTCCA
AGGACCTGGCTGTCCGTCTGCAACATTCATTGCAGTGTAAAGGAGAGTTAGAGAGCGCTCTGTCTGCTGT
CATCGCCACAGAGAAGAAGAAGGCAAACCAGTTGTCCAGCTGCAGCAAAGCACATACAGAGTGGGAGTTA
GAGCAGTCCCTACAGGACCAGGCACTGCTGAAAGCGCAGCTGACACAGTTGAAGGAGTCATTTCAACAAC
TCCAATTAGAAAGAGATGAGTGTGCTGAACATATAGAAGGAGAGAGGGCCCGGTGGCATCAGAGGATGAG
TAAAATGTCGCAGGAGATTTGCACATTAAAGAAAGAGAAGCAGCAAGATATGCGTCGGGTAGAGGAGCTG
GAGAGGAGCTTGTCCAAACTCAAAAACCAGATGGCTGAACCCTTGCCCCCGGAGCCCCCAGCAGTGCCCT
CTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGAGCTCCAGTCCCAGGTCAA
AAACAATCAGCACATAAGTCTCCTGAACCGGCGACAAGAAGAGAGGATTCGGGAACAGGAAGAGAGGCTT
CGGAAGCAGGAGGAGAGGCTTCAGGAGCAGCACGAGAAGCTTCGGCAGCTGGCCAAGCCACAGAGCGTCT
TCGAGGAGCTGAACAATGAGAACAAGAGCACACTGCAGTTGGAGCAGCAAGTAAAGGAGCTACAGGAGAA
GCTTGGCGAGGAGCACCTGGAAGCGGCCAGCCAGCAGAACCAGCAGCTAACGGCCCAGCTGAGCCTCATG
GCTCTCCCTGGGGAAGGACACGGAGGAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCAGCCCATGC
CGAGTGTCCCAGAGGACCTGGAGAGCAGGGAGGCCATGAGCAGCTTTATGGACCACCTGAAGGAGAAGGC
AGACCTGAGTGAGCTGGTGAAAAAACAAGAACTTCGCTTCATTCAATACTGGCAAGAGAGATGCCATCAG
AAAATCCATCACCTTTTATCAGAACCAGGGGGCCGTGCCAAAGATGCAGCACTGGGAGGAGGACACCATC
AGGCTGGAGCTCAGGGAGGAGATGAAGGTGAAGCTGCTGGAGCTGCAGCAGATGGTATTGCGGCTTACAG
CAACTACAACAATGGGCACAGAAAATTCCTGGCCGCTGCCCACAACTCTGCTGATGAGCCCGGTCCAGGA
GCCCCAGCCCCCCAGGAGCTTGGGGCTGCAGACAAGCATGGTGATCTTCGTGAGGTGACCCTCACCTCCT
CTGCCCAAGGAGAGGCCAGGGAGGATCCTCTCCTTGACAAGCCTACTGCACAGCCGATCGTGCAGGACCA
CCAGGAGCACCCAGGCTTGGGCAGCAACTGCTGTGTGCCATTATTTTGTTGGGCTTGGCTGCCAAGAAGA
AGGAGATAA

Translation (632 aa):
MAEETQHNKLAAAKKKLKEYWQKNRPRVPAGVNRNRKTNGSIPETATSGGCQPPGDSATGFHREGPTSSA
TLKDLESPCQERAVVLDSTSVKISRLKNTIKSLKQQKKQVEHQLEEEKKANNERQKAERELEVQIQTLII
QKEELNTDLYHMERSLRYFEEESKDLAVRLQHSLQCKGELESALSAVIATEKKKANQLSSCSKAHTEWEL
EQSLQDQALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMSQEICTLKKEKQQDMRRVEEL
ERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQSQVKNNQHISLLNRRQEERIREQEERL
RKQEERLQEQHEKLRQLAKPQSVFEELNNENKSTLQLEQQVKELQEKLGEEHLEAASQQNQQLTAQLSLM
ALPGEGHGGEHLDSEGEEAPQPMPSVPEDLESREAMSSFMDHLKEKADLSELVKKQELRFIQYWQERCHQ
KIHHLLSEPGGRAKDAALGGGHHQAGAQGGDEGEAAGAAADGIAAYSNYNNGHRKFLAAAHNSADEPGPG
APAPQELGAADKHGDLREVTLTSSAQGEAREDPLLDKPTAQPIVQDHQEHPGLGSNCCVPLFCWAWLPRR
RR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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