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Report for CCDS1374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1374.1 Public Homo sapiens 1 RGS18 24 110 108 CCDS HistoryNCBI Gene:64407Re-query CCDS DB by CCDS ID:1374.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1374.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367460.4 ENSP00000356430.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367460.4Link to Ensembl Protein Viewer:ENSP00000356430.3Re-query CCDS DB by Nucleotide ID:ENST00000367460Re-query CCDS DB by Protein ID:ENSP00000356430
Original member Current member NCBI NM_130782.3 NP_570138.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130782.3Link to Protein Sequence:NP_570138.1Re-query CCDS DB by Nucleotide ID:NM_130782Re-query CCDS DB by Protein ID:NP_570138Link to BLAST:NP_570138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570138.1 235 Q9NS28 235 100% 0 0

Chromosomal Locations for CCDS 1374.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 192158638 192158756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192159220 192159321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192160378 192160439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192181292 192181458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192184297 192184554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGAAACAACATTGCTTTTCTTTTCTCAAATAAATATGTGTGAATCAAAAGAAAAAACTTTTTTCAAGT
TAATACATGGTTCAGGAAAAGAAGAAACAAGCAAAGAAGCCAAAATCAGAGCTAAGGAAAAAAGAAATAG
ACTAAGTCTTCTTGTGCAGAAACCTGAGTTTCATGAAGACACCCGCTCCAGTAGATCTGGGCACTTGGCC
AAAGAAACAAGAGTCTCCCCTGAAGAGGCAGTGAAATGGGGTGAATCATTTGACAAACTGCTTTCCCATA
GAGATGGACTAGAGGCTTTTACCAGATTTCTTAAAACTGAATTCAGTGAAGAAAATATTGAATTTTGGAT
AGCCTGTGAAGATTTCAAGAAAAGCAAGGGACCTCAACAAATTCACCTTAAAGCAAAAGCAATATATGAG
AAATTTATACAGACTGATGCCCCAAAAGAGGTTAACCTTGATTTTCACACAAAAGAAGTCATTACAAACA
GCATCACTCAACCTACCCTCCACAGTTTTGATGCTGCACAAAGCAGAGTGTATCAGCTCATGGAACAAGA
CAGTTATACACGTTTTCTGAAATCTGACATCTATTTAGACTTGATGGAAGGAAGACCTCAGAGACCAACA
AATCTTAGGAGACGATCACGCTCATTTACCTGCAATGAATTCCAAGATGTACAATCAGATGTTGCCATTT
GGTTATAA

Translation (235 aa):
METTLLFFSQINMCESKEKTFFKLIHGSGKEETSKEAKIRAKEKRNRLSLLVQKPEFHEDTRSSRSGHLA
KETRVSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYE
KFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMEGRPQRPT
NLRRRSRSFTCNEFQDVQSDVAIWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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