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Report for CCDS22018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22018.1 Public Mus musculus 7 Tspan4 23 108 98 CCDS HistoryNCBI Gene:64540Re-query CCDS DB by CCDS ID:22018.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026585.13 ENSMUSP00000026585.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026585.13Link to Ensembl Protein Viewer:ENSMUSP00000026585.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026585Re-query CCDS DB by Protein ID:ENSMUSP00000026585
Original member Current member EBI ENSMUST00000117634.1 ENSMUSP00000113085.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117634.1Link to Ensembl Protein Viewer:ENSMUSP00000113085.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117634Re-query CCDS DB by Protein ID:ENSMUSP00000113085
Original member NCBI NM_001252588.1 NP_001239517.1 Updated not alive Link to Nucleotide Sequence:NM_001252588.1Link to Protein Sequence:NP_001239517.1Re-query CCDS DB by Nucleotide ID:NM_001252588Re-query CCDS DB by Protein ID:NP_001239517
Current member NCBI NM_001252588.2 NP_001239517.1 Accepted alive Link to Nucleotide Sequence:NM_001252588.2Link to Protein Sequence:NP_001239517.1Re-query CCDS DB by Nucleotide ID:NM_001252588Re-query CCDS DB by Protein ID:NP_001239517Link to BLAST:NP_001239517.1
Original member NCBI NM_053082.3 NP_444312.1 Updated not alive Link to Nucleotide Sequence:NM_053082.3Link to Protein Sequence:NP_444312.1Re-query CCDS DB by Nucleotide ID:NM_053082Re-query CCDS DB by Protein ID:NP_444312
Current member NCBI NM_053082.4 NP_444312.1 Accepted alive Link to Nucleotide Sequence:NM_053082.4Link to Protein Sequence:NP_444312.1Re-query CCDS DB by Nucleotide ID:NM_053082Re-query CCDS DB by Protein ID:NP_444312Link to BLAST:NP_444312.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239517.1 238 Q9DCK3 238 100% 0 0
NP_444312.1 238 Q9DCK3 238 100% 0 0

Chromosomal Locations for CCDS 22018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141482504 141482566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141489552 141489743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141490762 141490836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141491572 141491673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141491774 141491905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141491980 141492063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141492885 141492953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCGCGCGGCTGCCTCCAGGGCGTCAAGTACCTCATGTTCGCCTTCAACCTGCTCTTCTGGCTGGGTG
GCTGTGGTGTCCTGGGTGTTGGCATCTGGTTGGCTGCCACACAGGGAAACTTTGCCACCTTATCATCCTC
ATTTCCATCCTTGTCGGCTGCCAACCTGCTCATCGTCACCGGGACCTTCGTCATGGCCATCGGCTTCGTG
GGCTGCATTGGGGCCCTCAAGGAGAACAAGTGCCTACTGCTCACTTTCTTTGTGCTGCTGCTGCTAGTGT
TCCTGCTGGAAGCCACCATTGCTGTGCTCTTCTTTGCCTACAGTGACAAGATTGACAGTTATGCCCAACA
AGACCTGAAGAAGGGCCTGCATCTGTATGGCACACAGGGCAACGTGGGCCTCACCAATGCCTGGAGCATC
ATCCAGACTGATTTCCGATGCTGTGGAGTTTCCAATTACACTGATTGGTTTGAGGTATACAATGCCACTC
GTGTGCCTGACTCCTGCTGTCTGGAGTTCAGTGATAGCTGTGGGTTACATGAACCTGGTACCTGGTGGAA
GTCGCCCTGTTATGAGACAGTGAAGGCCTGGCTCCAGGAGAACCTGCTAGCTGTGGGCATCTTTGGACTG
TGCACGGCACTGGTGCAGATTCTGGGCCTCACCTTCGCTATGACCATGTACTGCCAGGTGGTAAAGGCGG
ACACCTACTGTGCATAG

Translation (238 aa):
MARGCLQGVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGNFATLSSSFPSLSAANLLIVTGTFVMAIGFV
GCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQDLKKGLHLYGTQGNVGLTNAWSI
IQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSDSCGLHEPGTWWKSPCYETVKAWLQENLLAVGIFGL
CTALVQILGLTFAMTMYCQVVKADTYCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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