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Report for CCDS204.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
204.2 Public Homo sapiens 1 PLA2G2F 24 110 108 CCDS HistoryNCBI Gene:64600Re-query CCDS DB by CCDS ID:204.2See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 204.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375102.4 ENSP00000364243.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375102.4Link to Ensembl Protein Viewer:ENSP00000364243.4Re-query CCDS DB by Nucleotide ID:ENST00000375102Re-query CCDS DB by Protein ID:ENSP00000364243
Original member Current member NCBI NM_022819.4 NP_073730.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022819.4Link to Protein Sequence:NP_073730.3Re-query CCDS DB by Nucleotide ID:NM_022819Re-query CCDS DB by Protein ID:NP_073730Link to BLAST:NP_073730.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073730.3 211 Q9BZM2-2 211 100% 0 0

Chromosomal Locations for CCDS 204.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 20139428 20139543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20140166 20140218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20143446 20143590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20144580 20144689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20148190 20148401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCAGATGGGGCAAAGGCCAACCCCAAAGGGTTCAAAAAGAAGGTGCTGGATAGATGCTTCTCTGGGT
GGAGGGGCCCACGCTTCGGGGCCTCCTGTCCTTCAAGAACCTCCAGGTCTAGCCTGGGTATGAAGAAGTT
CTTCACCGTGGCCATCCTTGCTGGCAGCGTTCTGTCCACAGCTCACGGCAGCCTGCTCAACCTGAAGGCC
ATGGTGGAGGCCGTCACAGGGAGGAGCGCCATCCTGTCCTTCGTGGGCTACGGTTGCTACTGTGGGCTGG
GGGGCCGTGGCCAGCCCAAGGATGAGGTGGACTGGTGCTGCCACGCCCACGACTGCTGCTACCAGGAACT
CTTTGACCAAGGCTGTCACCCCTATGTGGACCACTATGATCACACCATCGAGAACAACACTGAGATAGTC
TGCAGTGACCTCAACAAGACAGAGTGTGACAAGCAGACATGCATGTGTGACAAGAACATGGTTCTGTGCC
TCATGAACCAGACGTACCGAGAGGAGTACCGTGGCTTCCTCAATGTCTACTGCCAGGGCCCCACGCCCAA
CTGCAGCATCTATGAACCGCCCCCTGAGGAGGTCACCTGCAGTCACCAATCCCCAGCGCCCCCCGCCCCT
CCCTAG

Translation (211 aa):
MADGAKANPKGFKKKVLDRCFSGWRGPRFGASCPSRTSRSSLGMKKFFTVAILAGSVLSTAHGSLLNLKA
MVEAVTGRSAILSFVGYGCYCGLGGRGQPKDEVDWCCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIV
CSDLNKTECDKQTCMCDKNMVLCLMNQTYREEYRGFLNVYCQGPTPNCSIYEPPPEEVTCSHQSPAPPAP
P


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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