NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43806.1 Public Homo sapiens 9 SHB 24 110 108 CCDS HistoryNCBI Gene:6461Re-query CCDS DB by CCDS ID:43806.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43806.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377707.4 ENSP00000366936.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377707.4Link to Ensembl Protein Viewer:ENSP00000366936.3Re-query CCDS DB by Nucleotide ID:ENST00000377707Re-query CCDS DB by Protein ID:ENSP00000366936
Original member Current member NCBI NM_003028.3 NP_003019.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003028.3Link to Protein Sequence:NP_003019.2Re-query CCDS DB by Nucleotide ID:NM_003028Re-query CCDS DB by Protein ID:NP_003019Link to BLAST:NP_003019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003019.2 509 Q15464-1 509 100% 0 0

Chromosomal Locations for CCDS 43806.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37919821 37920004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37948635 37948754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37955883 37956054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37974622 37974837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38016011 38016131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38067929 38068645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGCCAAGTGGCTAAACAAGTACTTCAGCTTGGGCAACAGCAAGACCAAGAGCCCCCCGCAGCCGCCGC
GGCCAGACTACCGCGAGCAGCGGCGCCGAGGCGAGCGGCCTTCGCAGCCCCCCCAGGCCGTGCCGCAGGC
CTCCTCCGCCGCCTCGGCGTCCTGCGGTCCGGCCACCGCCTCCTGCTTCTCAGCCTCTTCGGGCTCGCTG
CCCGACGACAGCGGCAGCACCAGCGACCTCATCCGCGCCTACCGCGCGCAGAAGGAGCGAGACTTCGAGG
ACCCCTACAACGGGCCTGGCTCGTCGCTGCGCAAACTGCGCGCCATGTGCCGCCTGGACTACTGCGGCGG
CAGCGGGGAGCCAGGCGGGGTCCAGCGCGCCTTCTCGGCCTCGTCCGCGTCGGGCGCCGCGGGCTGTTGC
TGCGCCTCCTCGGGCGCGGGGGCCGCCGCGTCCTCGTCCTCGTCCTCCGGCTCTCCGCATCTCTACCGCA
GCAGCAGCGAGCGGCGGCCCGCCACGCCGGCCGAGGTGCGCTACATCTCCCCCAAGCACCGCCTCATCAA
AGTGGAGAGCGCCGCGGGCGGTGGGGCCGGGGACCCCCTGGGGGGCGCCTGCGCGGGCGGCCGCACCTGG
AGCCCGACGGCCTGCGGAGGCAAGAAACTGCTCAACAAGTGCGCCGCCTCAGCCGCGGAGGAGAGCGGGG
CCGGCAAGAAGGACAAGGTGACCATAGCCGATGACTACTCAGATCCCTTTGATGCCAAGAATGATCTCAA
GAGCAAAGCAGGAAAGGGGGAGAGTGCTGGCTACATGGAGCCCTATGAGGCACAGAGGATCATGACAGAA
TTTCAGAGGCAGGAAAGTGTCCGGTCCCAGCATAAAGGTATCCAGTTATATGACACCCCTTACGAACCTG
AAGGCCAAAGTGTTGACTCAGACTCGGAGAGCACAGTCAGCCCCCGACTGCGGGAGAGCAAGCTGCCCCA
GGATGACGACAGGCCCGCCGATGAGTACGACCAGCCTTGGGAGTGGAACCGGGTCACCATCCCAGCCCTG
GCAGCACAGTTTAATGGCAACGAGAAGCGGCAGTCATCCCCCTCACCTTCGCGGGACCGGCGGCGCCAGC
TTCGTGCCCCTGGAGGGGGCTTTAAGCCTATCAAACATGGGAGCCCTGAGTTCTGCGGGATCCTAGGAGA
AAGGGTGGATCCTGCCGTCCCCCTGGAGAAGCAAATATGGTATCACGGAGCCATCAGCAGAGGAGACGCC
GAGAACCTGCTGCGACTCTGCAAGGAGTGTAGCTACCTTGTCCGGAACAGCCAGACCAGCAAGCATGACT
ACTCCCTCTCCCTGAGGAGCAACCAGGGTTTTATGCACATGAAACTGGCCAAAACCAAAGAGAAATACGT
TCTGGGTCAGAACAGCCCTCCGTTCGACAGTGTCCCGGAAGTCATCCACTACTACACCACCAGAAAGCTA
CCCATCAAAGGGGCTGAGCACTTGTCCCTCCTCTATCCCGTGGCTGTGAGGACCCTGTGA

Translation (509 aa):
MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERPSQPPQAVPQASSAASASCGPATASCFSASSGSL
PDDSGSTSDLIRAYRAQKERDFEDPYNGPGSSLRKLRAMCRLDYCGGSGEPGGVQRAFSASSASGAAGCC
CASSGAGAAASSSSSSGSPHLYRSSSERRPATPAEVRYISPKHRLIKVESAAGGGAGDPLGGACAGGRTW
SPTACGGKKLLNKCAASAAEESGAGKKDKVTIADDYSDPFDAKNDLKSKAGKGESAGYMEPYEAQRIMTE
FQRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSPRLRESKLPQDDDRPADEYDQPWEWNRVTIPAL
AAQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVDPAVPLEKQIWYHGAISRGDA
ENLLRLCKECSYLVRNSQTSKHDYSLSLRSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKL
PIKGAEHLSLLYPVAVRTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH