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Report for CCDS46822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46822.1 Public Homo sapiens 3 SPINK8 24 110 108 CCDS HistoryNCBI Gene:646424Re-query CCDS DB by CCDS ID:46822.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46822.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434006.3 ENSP00000407497.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000434006.3Link to Ensembl Protein Viewer:ENSP00000407497.1Re-query CCDS DB by Nucleotide ID:ENST00000434006Re-query CCDS DB by Protein ID:ENSP00000407497
Original member Current member NCBI NM_001080525.3 NP_001073994.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080525.3Link to Protein Sequence:NP_001073994.1Re-query CCDS DB by Nucleotide ID:NM_001080525Re-query CCDS DB by Protein ID:NP_001073994Link to BLAST:NP_001073994.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073994.1 97 P0C7L1 97 100% 0 0

Chromosomal Locations for CCDS 46822.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48306992 48307003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48309904 48309946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48319497 48319618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48321025 48321074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48328275 48328341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGAAGGGGATCTGCTCAGACGCCATCCTTGTTCTAGCTACCTCCATGTGGATGGCCTTTGCAATTGACT
TCCCCCTTCCTATGGCCTCTGAAAGAGGTCAGCTAGACAAAACAATAGTTGAATGCCTCAAGAATGTAAA
TAAGTGCTGGTTTTTATCCTACATCAAGCCCAGTGAACCTATTTGTGGCAGTGACCAGGTTACCTACAGT
AGTGACTGCCATCTGTGCTCCAAAATTCTATTTGAAGGGCTTAACATAACTAAACTGTATGATGGACAAT
GTGAAAACTCTTGA

Translation (97 aa):
MKGICSDAILVLATSMWMAFAIDFPLPMASERGQLDKTIVECLKNVNKCWFLSYIKPSEPICGSDQVTYS
SDCHLCSKILFEGLNITKLYDGQCENS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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