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Report for CCDS45837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45837.1 Public Homo sapiens 18 CTAGE1 24 110 108 CCDS HistoryNCBI Gene:64693Re-query CCDS DB by CCDS ID:45837.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391403.4 ENSP00000375220.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391403.4Link to Ensembl Protein Viewer:ENSP00000375220.2Re-query CCDS DB by Nucleotide ID:ENST00000391403Re-query CCDS DB by Protein ID:ENSP00000375220
Original member Current member NCBI NM_172241.3 NP_758441.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172241.3Link to Protein Sequence:NP_758441.2Re-query CCDS DB by Nucleotide ID:NM_172241Re-query CCDS DB by Protein ID:NP_758441Link to BLAST:NP_758441.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758441.2 745 Q96RT6-1 745 100% 0 0

Chromosomal Locations for CCDS 45837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 22415574 22417811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGAGACCCGATTCTCATCCTTATGGTTTTCCATGGGAATTGGTGATACGTGCAGCTGTTGCTGGATTTT
TTGCTGTTCTCTTCTTGTGGAGAAGTTTTAGATCAGTTACGAGTCGGCTTTATGTGAGAAGAGAGAAAAA
GTTTGCTGTGGCACTTTCTGGACTAATTGAAGAAAAATGTAAACTACTTGAAAAATTTAGCCTTGTTCAA
AAAGAGTATGAAGGCTATGAAGTAGAGTCATCTTTAAAGAATGCCAGCTTTGAGAAGGAGGCAACAGAAG
CACAAAGTTTGGAGGCAACCTGCGAAAAGCTGAACAGGTTCAATTCTGAACTTGTGCATGAAATACTCTG
TCTAGAAAAAGAGTTAAAAGAAGAGAAATCTAAACATTCTGAACAAAATGAATTGATGGCGGATATTTCC
AAAAGGATACAGTCGCTAGAAGATGAGTCAAAATCCCTCAAATCACAAGTAGCTGAAGCCAAAATGACCT
TCAAGAGATTTCAAGCGAATGAAGAACGGTTGGAGATAGAAATACAAGATGCTTGGAAAGAAAATTCTGA
ACTTCAGGAAAGCCAGAAACAGCTTTTGCAAGAAGCTGAAGTATGGAAAGAACAAGTGAGTGAACTTATT
AAACAGAAAAGAACATTTGAAGACTCCAAAGTACATGCAGAACAAGTTCTAAATGATAAAGAAAATCACA
TCAAGACTCTGACTGAACGCTTGCTAAAGATGAAAGATGGGGTTGCTATGCTTGAAGAAGATGTAACGGA
TGATGATAACTTGGAATTAGAAATGAACAGTGAATCGGAAGATGGTGCTTACTTAGATAATCCTCCAAAA
GGAGCTTTGAAGAAACTGATTCATGCTGCTAAGTTAAATGCTTCCTTAAAAACCTTAGAAGGAGAAAGAA
ACCAAATTTATATTCAATTATCTGAAGTTGATAAAACAAAGGAAGAGCTTACAGAGCATATTAAAAATCT
TCAGACTGAACAAGCATCTTTGCAGTCAGAAAACACACATTTTGAAAGTGAGAATCAGAAGCTTCAGCAG
AAACTTAAAGTAATGACTGAATTATATCAAGAAAATGAAATGAAACTCTACAGGAAATTAATAGTAGAGG
AAAAATGCCGGTTAGAGAAAGAAGAGAAACTTTCTAAAGTAGACGAAATGATCAGCCATGCCACTGAAGA
GCTGGAGACCTACCGAAAGCGAGCCAAAGATCTTAAAGAATTTGAGAAAACTATTCATTTTTATCAAAAG
AAGATTATTCTCCATGAGAAAAAAGCACATGATAATTGGTCGGCAGCTTGGACTGCTGAAAGAAACCTCA
ATGATTTAAGGAAAGAAAATGCTCACAACAGACAAAAATTAACTGAAATAGAGTTTAAAATAAAACTTTT
AGAAAAAGATCCTTATGGACTTGATGTTCCAAATACAGCATTTGGCAGACAGCATTCCCCATATGGTCCC
TCACCATTGGGTTGGCCTTCATCTGAAACGAGAGCTTCTCTCTATCCTCCAACTTTGTTGGAAGGTCCTC
TCAGACTCTCACCTTTGCTTCCACGGGGAGGAGGAAGAGGCTCCAGAGGCCCAGGGAATCCTCCGGACCA
TCAGATTACCAAAGAAAGAGGAGAATCAAGCTGTGATAGGTTAACTGATCCTCACAGGGCTCCTTCTGAC
GCTGGGCCCCTGGCACCTCCGTGGGAACAGGACTATAGGATGATGTTTCCTCCACCAGGACAATCATATC
CTGATTCAGCTCTCCCTCCACAAAGGCAAGACAGATTTTATTCTAATTGTGCTAGACTCTCTGGACCAGC
AGAACTCAGAAGTTTTAATATGCCTTCTTTGGATAAAATGGATGGGTCAATGCCTTCAGAAATGGAATCC
AGTAGAAATGATACCAAAGATAATCTTGGTAATTTAAAGGTGCCTGATTCATCTCTCCCCGCTGAAAATG
AAGCAACTGGCCCTGGCTTTGTTCCTCCACCTCTTGCTCCAATCAGAGGTTTATTGTTTCCAGTAGATAC
AAGGGGCCCGTTCATAAGAAGAGGACCTCCTTTCCCCCCACCTCCTCCAGGAACCGTGTTTGGAGCTTCT
CCAGATTATTTTTCTCCAAGGGATGTCCCAGGTCCACCACGTGCTCCATTTGCAATGAGAAATGTCTATT
TACCGAGAGGTTTTCTTCCTTACCGTCCCCCAAGACCTGCATTTTTCCCCCCAGCCCCCACATTCTGA

Translation (745 aa):
MRPDSHPYGFPWELVIRAAVAGFFAVLFLWRSFRSVTSRLYVRREKKFAVALSGLIEEKCKLLEKFSLVQ
KEYEGYEVESSLKNASFEKEATEAQSLEATCEKLNRFNSELVHEILCLEKELKEEKSKHSEQNELMADIS
KRIQSLEDESKSLKSQVAEAKMTFKRFQANEERLEIEIQDAWKENSELQESQKQLLQEAEVWKEQVSELI
KQKRTFEDSKVHAEQVLNDKENHIKTLTERLLKMKDGVAMLEEDVTDDDNLELEMNSESEDGAYLDNPPK
GALKKLIHAAKLNASLKTLEGERNQIYIQLSEVDKTKEELTEHIKNLQTEQASLQSENTHFESENQKLQQ
KLKVMTELYQENEMKLYRKLIVEEKCRLEKEEKLSKVDEMISHATEELETYRKRAKDLKEFEKTIHFYQK
KIILHEKKAHDNWSAAWTAERNLNDLRKENAHNRQKLTEIEFKIKLLEKDPYGLDVPNTAFGRQHSPYGP
SPLGWPSSETRASLYPPTLLEGPLRLSPLLPRGGGRGSRGPGNPPDHQITKERGESSCDRLTDPHRAPSD
AGPLAPPWEQDYRMMFPPPGQSYPDSALPPQRQDRFYSNCARLSGPAELRSFNMPSLDKMDGSMPSEMES
SRNDTKDNLGNLKVPDSSLPAENEATGPGFVPPPLAPIRGLLFPVDTRGPFIRRGPPFPPPPPGTVFGAS
PDYFSPRDVPGPPRAPFAMRNVYLPRGFLPYRPPRPAFFPPAPTF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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