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Report for CCDS1533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1533.1 Public Homo sapiens 1 AIDA 24 110 108 CCDS HistoryNCBI Gene:64853Re-query CCDS DB by CCDS ID:1533.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340020.11 ENSP00000339161.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340020.11Link to Ensembl Protein Viewer:ENSP00000339161.6Re-query CCDS DB by Nucleotide ID:ENST00000340020Re-query CCDS DB by Protein ID:ENSP00000339161
Original member Current member NCBI NM_022831.4 NP_073742.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022831.4Link to Protein Sequence:NP_073742.2Re-query CCDS DB by Nucleotide ID:NM_022831Re-query CCDS DB by Protein ID:NP_073742Link to BLAST:NP_073742.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073742.2 306 Q96BJ3-1 306 100% 0 0

Chromosomal Locations for CCDS 1533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 222669893 222669989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222670133 222670250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222673313 222673435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222676096 222676218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222686930 222687036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222687595 222687658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222693789 222693843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222694210 222694263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222703148 222703217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222712208 222712317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGTCGGAGGTGACCCGGAGTCTGCTGCAGCGCTGGGGCGCCAGTTTTAGGAGAGGCGCCGACTTCGACT
CTTGGGGCCAGCTGGTGGAGGCGATAGACGAGTATCAGATATTAGCAAGACATCTACAAAAGGAGGCCCA
AGCTCAACACAATAATTCTGAATTCACAGAAGAACAAAAGAAAACCATAGGCAAAATTGCAACATGCTTG
GAATTGCGAAGTGCAGCTTTACAGTCCACACAGTCTCAAGAAGAATTTAAACTGGAGGACCTGAAGAAGC
TAGAACCAATCCTAAAGAATATTCTTACATATAATAAAGAATTCCCATTTGATGTTCAGCCTGTCCCATT
AAGAAGAATTTTGGCACCTGGTGAAGAAGAGAATTTGGAATTTGAAGAAGATGAAGAAGAGGGTGGTGCT
GGAGCAGGGTCTCCTGATTCTTTTCCTGCTAGAGTTCCCGGTACTTTATTACCAAGGTTGCCATCGGAAC
CAGGAATGACATTACTCACTATCAGAATTGAGAAAATTGGTTTGAAAGATGCTGGGCAGTGCATCGATCC
CTATATTACAGTTAGTGTAAAGGATCTGAATGGCATAGACTTAACTCCTGTGCAAGATACTCCTGTGGCT
TCAAGAAAAGAAGATACATATGTTCATTTTAATGTGGACATTGAGCTCCAGAAGCATGTTGAAAAATTAA
CCAAAGGTGCAGCTATCTTCTTTGAATTCAAACACTACAAGCCTAAAAAAAGGTTTACCAGCACCAAGTG
TTTTGCTTTCATGGAGATGGATGAAATTAAACCTGGGCCAATTGTAATAGAACTATACAAGAAACCCACT
GACTTTAAAAGAAAGAAATTGCAATTATTGACCAAGAAACCACTTTATCTTCATCTACATCAAACTTTGC
ACAAGGAATGA

Translation (306 aa):
MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCL
ELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRILAPGEEENLEFEEDEEEGGA
GAGSPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVA
SRKEDTYVHFNVDIELQKHVEKLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPT
DFKRKKLQLLTKKPLYLHLHQTLHKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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