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Report for CCDS2790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2790.1 Public Homo sapiens 3 CCDC71 24 110 108 CCDS HistoryNCBI Gene:64925Re-query CCDS DB by CCDS ID:2790.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321895.7 ENSP00000319006.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321895.7Link to Ensembl Protein Viewer:ENSP00000319006.6Re-query CCDS DB by Nucleotide ID:ENST00000321895Re-query CCDS DB by Protein ID:ENSP00000319006
Original member Current member NCBI NM_022903.4 NP_075054.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022903.4Link to Protein Sequence:NP_075054.3Re-query CCDS DB by Nucleotide ID:NM_022903Re-query CCDS DB by Protein ID:NP_075054Link to BLAST:NP_075054.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075054.3 467 Q8IV32 467 100% 0 0

Chromosomal Locations for CCDS 2790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49162805 49164208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGAGTGTGGTGGTTCAGCATGTGGAGGAAAAAGCTGTGCACTCCTGGTCGCGCATCTCCACGGCAGGGA
AGAAGGCCCTGGAAGAGGCACTGCTTGTCTTTAACCCAATGAGCCAGGATCTCAGTGCCACAGAGGCCCA
GCTTGTGGCCTTCCTGCAGGGCCTGCGAGATGATGGCTTCCAACCTACCATCCTGCGCAGTGGTGATGTC
TATGGCTATAGTTCATGCACAGCTAATCCCCCAAGCCAGACGAAACTGCAAGCTCGTGCCCCTAACCCAA
CTGCCACATCACCTCCAGCCAGTGCTCCCCGAACTGCCATGCGGTTGCCTGCAGGTCGGGCCACACTGCT
TCCCATGCCGCTATCTGGCAGACTGGCCAAAGCATCCACACCAGCCCTTGCCAAGCATGCTACCACCAAC
CTGCTGCTGAGCTCTCTGAAGCAATCAAGTGCCAGCCATGCCCGGGGTGCAGCAGTGGGCTTCCCCACCC
ACCTTTATCCAGGTGTCTACCCTGCCATGCGGCTCTCTGTTGTCCTTGAGGCCCTGGTTCCACTTAAGAC
TCCCATGCCCTGCTTGGGTGCCAAGCACAAGGCACAGTCACTGCAGCTCTCACTTGCAGACTCTCCTCTG
AAACTGCGGAAAAGTTCAGGGAAGGGTCCGGGGAACCCTCGGCCCAAAGCTCCCAGAAAAACCACAAGCA
AGGGCCCCAAGTGTCTGACTCGCAAAGGCCCTGGGGCTGGACCCCGACGAGGCTCTGGGCACCAGAGCAA
AACCAACAGAGCCACTGGGTCCCCCAGTGTCCGGCGAATGAAAGGGGGCTCTGCCCTGGGCACCAAAACA
GCCCAGGCCAAGGTAGCTCGAACACTGGCCAAAGCTGCTCGTGCCCAAGCCAAGGTGGCTCGAACACAGG
CCAAGGCTGCTAAGGCCCGGGCCAAGGCCAAGGCAGCACAGGTCAAGGCTAAGGCCAAAGCTAAGGCAGC
ACAGGTCAAGGCCAAGGCCAAAGTCATGGCAGCATGGGCCAAGGCCAAGGCTAAAGCCAAGGCAGTACGG
GCCAAGGCCAAGGTGGCTCGGACCCAGCCCAGGGGCAGAGGCAGGCCAAAGGGATCTGCTAAGGCCAGAA
CTACAAGGAAGGGCCAGAAAAACCGCCCTGAGACTGTTGGGCAGAAGAGGAAAAGGGCTGAGGAGGCAAA
AGATCTTCCTCCCAAGAAGAGAACACGGCTTGGGCCCCGATCTCCTAAGGCATGGCTAGGGCCTGGAACA
GCAAAGCTGCTGAAGTTCCGTGCCATAAAGGTAGATAGGCGGTCCTCGGATGATGAGGTGCGGCAGCGGG
CTCAGCGGATCCTCCGCGTGAACCTGTCACCTGTAATACGGCTCCAGCCATTGCTGCCATATTCAGCAGT
CTGA

Translation (467 aa):
MSVVVQHVEEKAVHSWSRISTAGKKALEEALLVFNPMSQDLSATEAQLVAFLQGLRDDGFQPTILRSGDV
YGYSSCTANPPSQTKLQARAPNPTATSPPASAPRTAMRLPAGRATLLPMPLSGRLAKASTPALAKHATTN
LLLSSLKQSSASHARGAAVGFPTHLYPGVYPAMRLSVVLEALVPLKTPMPCLGAKHKAQSLQLSLADSPL
KLRKSSGKGPGNPRPKAPRKTTSKGPKCLTRKGPGAGPRRGSGHQSKTNRATGSPSVRRMKGGSALGTKT
AQAKVARTLAKAARAQAKVARTQAKAAKARAKAKAAQVKAKAKAKAAQVKAKAKVMAAWAKAKAKAKAVR
AKAKVARTQPRGRGRPKGSAKARTTRKGQKNRPETVGQKRKRAEEAKDLPPKKRTRLGPRSPKAWLGPGT
AKLLKFRAIKVDRRSSDDEVRQRAQRILRVNLSPVIRLQPLLPYSAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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