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Report for CCDS8108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8108.1 Public Homo sapiens 11 SIPA1 24 110 108 CCDS HistoryNCBI Gene:6494Re-query CCDS DB by CCDS ID:8108.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394224.3 ENSP00000377771.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394224.3Link to Ensembl Protein Viewer:ENSP00000377771.3Re-query CCDS DB by Nucleotide ID:ENST00000394224Re-query CCDS DB by Protein ID:ENSP00000377771
Original member Current member EBI ENST00000534313.6 ENSP00000436269.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000534313.6Link to Ensembl Protein Viewer:ENSP00000436269.1Re-query CCDS DB by Nucleotide ID:ENST00000534313Re-query CCDS DB by Protein ID:ENSP00000436269
Original member Current member NCBI NM_006747.4 NP_006738.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006747.4Link to Protein Sequence:NP_006738.3Re-query CCDS DB by Nucleotide ID:NM_006747Re-query CCDS DB by Protein ID:NP_006738Link to BLAST:NP_006738.3
Original member Current member NCBI NM_153253.30 NP_694985.29 Accepted alive Link to Nucleotide Sequence:NM_153253.30Link to Protein Sequence:NP_694985.29Re-query CCDS DB by Nucleotide ID:NM_153253Re-query CCDS DB by Protein ID:NP_694985Link to BLAST:NP_694985.29

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006738.3 1042 Q96FS4 1042 100% 0 0
NP_694985.29 1042 Q96FS4 1042 100% 0 0

Chromosomal Locations for CCDS 8108.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65640922 65641600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65642250 65642377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65642463 65642639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65644955 65645129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65645854 65645957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65646221 65646378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65646456 65647065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65647384 65647658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65649262 65649480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65649561 65649672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65649757 65649865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65649950 65650051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65650138 65650192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65650401 65650479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65650569 65650715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGCCCATGTGGGCCGGCGGTGTGGGGAGCCCTCGGCGGGGCATGGCCCCTGCGTCCACAGATGACCTCT
TTGCCCGCAAGCTGCGCCAGCCAGCAAGGCCCCCGCTGACACCGCACACCTTCGAGCCGAGGCCAGTCCG
GGGCCCACTCCTGCGCAGCGGCAGCGATGCAGGCGAGGCCAGGCCCCCCACGCCAGCCAGCCCCCGTGCC
CGTGCCCACAGCCACGAAGAGGCCAGCCGACCTGCAGCCACTTCCACCCGGCTCTTCACTGACCCGCTGG
CACTGCTGGGGCTGCCAGCAGAGGAACCAGAGCCTGCCTTCCCACCAGTGCTTGAGCCTCGATGGTTTGC
CCACTATGACGTGCAAAGCCTGCTCTTTGATTGGGCTCCGAGGTCTCAGGGGATGGGGAGCCACTCAGAG
GCCAGCTCTGGGACCCTGGCTTCAGCCGAGGACCAGGCTGCCAGCTCGGACCTGCTGCATGGGGCACCTG
GCTTTGTGTGTGAGCTCGGGGGTGAGGGTGAGCTAGGCCTGGGTGGACCAGCATCCCCACCTGTGCCCCC
TGCACTGCCCAACGCGGCCGTGTCCATCCTGGAGGAGCCACAGAACCGAACCTCGGCCTACAGCCTGGAG
CACGCAGACCTGGGTGCTGGCTACTACCGCAAATACTTCTATGGCAAAGAACATCAGAACTTCTTCGGGA
TGGACGAGTCGCTGGGCCCGGTGGCAGTGAGCCTGCGGCGGGAGGAGAAGGAGGGCAGCGGAGGGGGCAC
CCTGCACAGCTACCGCGTCATCGTGCGGACCACGCAGCTCCGGACACTCCGTGGCACCATCTCGGAGGAC
GCGCTGCCGCCGGGGCCCCCACGGGGTCTGTCCCCAAGGAAACTTCTGGAGCACGTGGCGCCGCAGCTGA
GCCCCAGCTGCCTGCGCCTGGGCTCAGCTTCACCCAAGGTACCACGGACGCTGCTCACACTGGATGAGCA
AGTGCTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGGGCGGGCCAGGGCTCGGAGGAGGAGATG
TACAACAACCAGGAGGCGGGACCGGCCTTCATGCAGTTTCTCACCTTGCTGGGCGATGTGGTGCGGCTCA
AAGGCTTTGAGAGTTACCGGGCCCAGCTAGACACCAAAACGGATTCCACAGGCACGCACTCCCTCTACAC
CACATACCAGGACCACGAGATCATGTTCCACGTGTCCACGATGCTGCCTTACACCCCTAATAACCAGCAG
CAGCTCCTCCGGAAGCGCCACATTGGCAACGACATTGTGACCATCGTGTTCCAGGAGCCTGGCAGCAAGC
CCTTCTGCCCCACCACCATCCGCTCGCACTTCCAGCACGTGTTCCTAGTGGTGCGGGCACACACACCCTG
CACGCCACACACCACCTACAGGGTGGCCGTGAGCCGCACCCAGGACACCCCTGCCTTCGGGCCAGCTCTG
CCTGCTGGCGGAGGCCCCTTCGCAGCCAACGCCGACTTCCGGGCCTTCCTGCTGGCCAAAGCGCTGAATG
GTGAGCAGGCGGCCGGCCACGCGCGCCAGTTCCACGCCATGGCCACGCGCACCCGCCAGCAGTACCTGCA
AGACCTGGCCACCAACGAGGTGACCACTACGTCGCTGGACTCGGCTTCACGCTTCGGCCTGCCCTCCCTG
GGTGGGAGGCGCCGGGCGGCCCCTCGGGGCCCAGGCGCCGAGCTGCAGGCAGCGGGCTCACTGGTGTGGG
GAGTGCGCGCGGCGCCCGGGGCGCGGGTCGCCGCCGGGGCTCAGGCGAGCGGCCCCGAAGGCATCGAGGT
GCCCTGCCTGCTGGGCATCTCGGCCGAGGCTCTGGTGCTGGTGGCGCCGCGCGACGGCCGCGTAGTGTTC
AATTGCGCCTGTCGCGACGTGCTGGCCTGGACCTTCTCCGAGCAGCAGCTGGACCTGTACCACGGCCGCG
GGGAGGCGATCACGCTGCGCTTCGACGGGTCCCCCGGCCAAGCCGTGGGCGAGGTGGTGGCGCGCCTGCA
GCTGGTGAGCCGTGGCTGCGAGACCCGCGAGCTGGCGCTGCCCCGCGACGGTCAAGGCCGCCTGGGCTTC
GAGGTGGACGCCGAGGGATTCGTCACGCACGTGGAGCGCTTCACATTCGCCGAGACGGCGGGGCTGCGGC
CCGGGGCGCGCCTCCTGCGCGTGTGCGGCCAGACTCTGCCCAGCCTCCGGCCCGAGGCCGCTGCCCAGCT
CCTGCGCTCGGCGCCCAAGGTCTGCGTCACCGTCCTGCCCCCCGACGAGAGCGGCCGGCCCCGCAGGAGT
TTTTCGGAGCTGTACACGCTGTCGCTGCAGGAGCCTAGCCGGCGGGGGGCCCCAGATCCTGTGCAGGATG
AGGTCCAGGGGGTGACCCTGCTGCCCACCACAAAGCAGCTGCTGCACCTGTGCCTGCAAGATGGTGGCAG
TCCTCCAGGGCCTGGGGATCTGGCCGAGGAGAGGACTGAGTTCCTGCACAGCCAGAACTCGCTGTCACCA
CGCAGCTCTCTGTCGGATGAGGCCCCAGTCCTGCCCAACACCACCCCGGACCTCCTCCTGGCCACCACAG
CCAAGCCATCAGTACCCAGTGCTGACAGTGAGACACCCCTGACCCAGGACAGGCCAGGCAGTCCCAGTGG
CTCTGAGGACAAGGGCAACCCGGCGCCGGAGCTGAGGGCCTCCTTTCTGCCACGTACCTTGTCTCTGCGG
AACTCCATCAGCAGGATCATGTCGGAGGCGGGCAGTGGGACCCTGGAGGACGAGTGGCAGGCCATCTCGG
AGATTGCCTCTACTTGCAACACCATTCTGGAGTCGCTGTCCCGAGAGGGACAGCCCATCCCAGAGAGTGG
AGACCCTAAGGGAACTCCAAAATCTGATGCTGAGCCAGAGCCTGGGAACCTCTCAGAGAAGGTCTCTCAC
TTGGAGTCCATGCTCAGGAAGCTGCAGGAGGACCTGCAGAAGGAGAAGGCGGACAGGGCGGCCCTGGAGG
AGGAGGTGCGGAGCCTGAGACACAACAACCGGCGGCTGCAGGCGGAGTCTGAGAGTGCAGCCACACGCCT
CCTCCTGGCCTCCAAGCAGCTGGGCTCACCCACCGCCGACCTGGCCTGA

Translation (1042 aa):
MPMWAGGVGSPRRGMAPASTDDLFARKLRQPARPPLTPHTFEPRPVRGPLLRSGSDAGEARPPTPASPRA
RAHSHEEASRPAATSTRLFTDPLALLGLPAEEPEPAFPPVLEPRWFAHYDVQSLLFDWAPRSQGMGSHSE
ASSGTLASAEDQAASSDLLHGAPGFVCELGGEGELGLGGPASPPVPPALPNAAVSILEEPQNRTSAYSLE
HADLGAGYYRKYFYGKEHQNFFGMDESLGPVAVSLRREEKEGSGGGTLHSYRVIVRTTQLRTLRGTISED
ALPPGPPRGLSPRKLLEHVAPQLSPSCLRLGSASPKVPRTLLTLDEQVLSFQRKVGILYCRAGQGSEEEM
YNNQEAGPAFMQFLTLLGDVVRLKGFESYRAQLDTKTDSTGTHSLYTTYQDHEIMFHVSTMLPYTPNNQQ
QLLRKRHIGNDIVTIVFQEPGSKPFCPTTIRSHFQHVFLVVRAHTPCTPHTTYRVAVSRTQDTPAFGPAL
PAGGGPFAANADFRAFLLAKALNGEQAAGHARQFHAMATRTRQQYLQDLATNEVTTTSLDSASRFGLPSL
GGRRRAAPRGPGAELQAAGSLVWGVRAAPGARVAAGAQASGPEGIEVPCLLGISAEALVLVAPRDGRVVF
NCACRDVLAWTFSEQQLDLYHGRGEAITLRFDGSPGQAVGEVVARLQLVSRGCETRELALPRDGQGRLGF
EVDAEGFVTHVERFTFAETAGLRPGARLLRVCGQTLPSLRPEAAAQLLRSAPKVCVTVLPPDESGRPRRS
FSELYTLSLQEPSRRGAPDPVQDEVQGVTLLPTTKQLLHLCLQDGGSPPGPGDLAEERTEFLHSQNSLSP
RSSLSDEAPVLPNTTPDLLLATTAKPSVPSADSETPLTQDRPGSPSGSEDKGNPAPELRASFLPRTLSLR
NSISRIMSEAGSGTLEDEWQAISEIASTCNTILESLSREGQPIPESGDPKGTPKSDAEPEPGNLSEKVSH
LESMLRKLQEDLQKEKADRAALEEEVRSLRHNNRRLQAESESAATRLLLASKQLGSPTADLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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