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Report for CCDS80877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80877.1 Public Mus musculus 8 Mfap3l 23 108 98 CCDS HistoryNCBI Gene:71306Re-query CCDS DB by CCDS ID:80877.1Re-query CCDS DB by GeneID:71306See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161421.1 ENSMUSP00000124136.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161421.1Link to Ensembl Protein Viewer:ENSMUSP00000124136.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161421Re-query CCDS DB by Protein ID:ENSMUSP00000124136
Original member Current member NCBI NM_001293769.1 NP_001280698.1 Accepted alive Link to Nucleotide Sequence:NM_001293769.1Link to Protein Sequence:NP_001280698.1Re-query CCDS DB by Nucleotide ID:NM_001293769Re-query CCDS DB by Protein ID:NP_001280698Link to BLAST:NP_001280698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280698.1 306 Q9D3X9-2 306 100% 0 0

Chromosomal Locations for CCDS 80877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 60671035 60671955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGCTGGACGGTGGCCTCCTGAACATCACCAAGGTGTCTTTCTCAGACAGAGGTAAATACACATGTGTGG
CATCTAACATCTATGGCACTATAAACAACACGGTGACACTGAGAGTCATCTTTACCTCTGGAGACATGGG
CGTGTACTATATGGTGGTGTGCCTCGTGGCCTTCACCATAGTCATGATCCTCAACATCACCCGCCTGTGT
ATGATGAGCAGTCACCTAAAGAAGACTGAGAAAGCCATCAATGAGTTCTTTAGGACAGAAGGTGCAGAGA
AGCTGCAGAAGGCTTTTGAGATTGCTAAACGCATCCCCATCATAACCTCAGCCAAAACTCTAGAACTTGC
CAAAGTGACTCAGTTCAAAACCATGGAATTTGCTAGGTACATTGAAGAGCTTGCCAGGAGCGTGCCCCTG
CCTCCCCTCATCATGAACTGCAGGACGATCATGGAGGAGATCATGGAAGTAGTCGGGCTGGAGGAGCAGG
GGCAGAATTTTGTGAGGCATACCCCAGAAGGCCAGGAAGCCCCAGATAGGGACGAGGTATACACCATCCC
CAACTCACTGAAGCGAAGTGAGTCCCCCACCGCTGACTCGGATGCTTCGTCATTGCATGAGCAGCCTCAG
CAGATTGCCATCAAGGTTTCAGTTCACCCCCAGTCCAAAAGGGATCATGTGGATGACCAGGAGGGAGGAC
ACTTTGAGGTCAAAGATGAAGAGGAGACAGAACCATCAGAGGAACATTCCCCAGAGACTGCAGAGCCTTC
TACAGACATAACGACCACGGAGCTGACGTCCGAAGAGACGTCTCCTGTAGAGGCACCAGAACGAGGACTG
CCACCAGCACACCTAGAAACAACCGAGCCAGCAGTGACATGTGACAGAAACACCTGCATTATTTATGAAA
GCCATGTCTAA

Translation (306 aa):
MLDGGLLNITKVSFSDRGKYTCVASNIYGTINNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMILNITRLC
MMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPL
PPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPEGQEAPDRDEVYTIPNSLKRSESPTADSDASSLHEQPQ
QIAIKVSVHPQSKRDHVDDQEGGHFEVKDEEETEPSEEHSPETAEPSTDITTTELTSEETSPVEAPERGL
PPAHLETTEPAVTCDRNTCIIYESHV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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