NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 25, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33336.1 Public Homo sapiens 2 PLEKHA3 24 110 108 CCDS HistoryNCBI Gene:65977Re-query CCDS DB by CCDS ID:33336.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000234453.10 ENSP00000234453.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000234453.10Link to Ensembl Protein Viewer:ENSP00000234453.4Re-query CCDS DB by Nucleotide ID:ENST00000234453Re-query CCDS DB by Protein ID:ENSP00000234453
Original member Current member NCBI NM_019091.4 NP_061964.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019091.4Link to Protein Sequence:NP_061964.3Re-query CCDS DB by Nucleotide ID:NM_019091Re-query CCDS DB by Protein ID:NP_061964Link to BLAST:NP_061964.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061964.3 300 Q9HB20 300 100% 0 0

Chromosomal Locations for CCDS 33336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178480870 178480909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178485641 178485757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178490659 178490814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178493853 178493989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178495496 178495660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178499211 178499254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178501061 178501176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178503760 178503887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAGGGGGTGTTGTACAAGTGGACCAACTATCTCACAGGCTGGCAGCCTCGTTGGTTTGTTTTAGATA
ATGGAATCTTATCCTACTATGATTCACAAGATGATGTTTGCAAAGGGAGCAAAGGAAGCATAAAGATGGC
AGTTTGTGAAATTAAAGTTCATTCAGCAGACAACACAAGAATGGAATTAATCATTCCTGGAGAGCAGCAT
TTCTACATGAAGGCAGTGAATGCAGCTGAAAGACAGAGGTGGCTGGTCGCTCTGGGGAGCTCCAAAGCAT
GTTTGACTGATACAAGGACTAAAAAAGAAAAAGAAATAAGTGAAACCAGTGAATCGCTGAAAACCAAAAT
GTCTGAACTTCGCCTCTACTGTGACCTCTTAATGCAGCAAGTTCATACAATACAGGAATTTGTTCACCAT
GATGAGAATCATTCATCTCCTAGTGCAGAGAACATGAATGAAGCCTCTTCTCTGCTTAGTGCCACGTGTA
ACACATTCATCACAACGCTTGAGGAATGTGTGAAGATAGCCAATGCCAAGTTTAAACCTGAGATGTTTCA
ACTGCACCATCCGGATCCCTTAGTTTCTCCTGTGTCACCTTCTCCTGTTCAAATGATGAAGCGTTCTGTC
AGCCACCCTGGTTCTTGCAGTTCAGAGAGGAGTAGCCACTCTATAAAAGAACCAGTATCTACACTTCACC
GACTCTCCCAGCGACGCCGAAGAACCTACTCAGATACAGATTCTTGTAGTGATATTCCTCTTGAAGACCC
AGATAGACCTGTTCACTGTTCAAAAAATACACTTAATGGAGATTTGGCATCAGCAACCATTCCTGAAGAA
AGCAGACTTATGGCCAAAAAACAATCTGAATCAGAAGATACTCTTCCATCCTTCTCTTCCTGA

Translation (300 aa):
MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTRMELIIPGEQH
FYMKAVNAAERQRWLVALGSSKACLTDTRTKKEKEISETSESLKTKMSELRLYCDLLMQQVHTIQEFVHH
DENHSSPSAENMNEASSLLSATCNTFITTLEECVKIANAKFKPEMFQLHHPDPLVSPVSPSPVQMMKRSV
SHPGSCSSERSSHSIKEPVSTLHRLSQRRRRTYSDTDSCSDIPLEDPDRPVHCSKNTLNGDLASATIPEE
SRLMAKKQSESEDTLPSFSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH