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Report for CCDS39482.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
39482.1 |
Public |
Mus musculus |
6 |
Tmem176a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:66058](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:39482.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 39482.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000101426.10 |
ENSMUSP00000098969.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000101426.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000098969.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000101426](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000098969](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000168406.3 |
ENSMUSP00000131775.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000168406.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000131775.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000168406](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000131775](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000204482.2 |
ENSMUSP00000145101.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000204482.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000145101.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000204482](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000145101](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001098271.1 |
NP_001091741.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001098271.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001091741.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001098271](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001091741](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001091741.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_025326.4 |
NP_079602.4 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_025326.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_079602.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_025326](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_079602](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_079602.4](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 39482.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (735 nt): ATGTCCACAGACATGGAGACTGCAGTCGTCGGCAAGGTGGACCCTGAGGCTCCACAACCCACCCACATTG ATGTGCACATCCACCAGGAGTCTGCTCTGGCCAAACTTCTGCTGGCCGGATGCTCATTGCTAAGGATTCC AGCATCCGCTTCCACCCAGAGCCAGGGCAGCAGCAGAGTGCTGGTGGCCTCCTGGGTGGTGCAGACTGTG CTGGGGGCTCTGAGTGTGGTTCTGGGTGGAACCCTCTACATAGGCCATTATTTAGCCATGTATTCCGAAG GCGCCCCCTTCTGGACTGGGATCGTGGCTATGCTGGCTGGAGCTGTTGCCTTCCTTCACAAGAAACGGGG TGGTACCTGCTGGGCCCTGATGAGGACCCTTCTTGTGCTGGCAAGTTTCTGCACCGCTGTGGCTGCCATC GTTATTGGGTCTCGTGAGTTGAATTTTTACTGGTATTTTCTCGGAGATGATGTCTGTCAAAGAGACTCTT CATATGGATGGTCCACCATGCCTAGAACCACTCCAGTTCCCGAAGAAGCTGATAGGATTGCCTTGTGCAT ATACTACACAAGCATGCTAAAGACCCTGCTCATGAGCCTCCAAGCTATGCTCTTGGGTATCTGGGTGCTG CTGCTCCTGGCTTCTCTCACCCCTGTATGTGTCTACATCTGGAAAAGATTTTTCACAAAGGCGGAAACAG AGGAGAAGAAACTGCTGGGTGCAGCTGTGATCTAG
Translation (244 aa): MSTDMETAVVGKVDPEAPQPTHIDVHIHQESALAKLLLAGCSLLRIPASASTQSQGSSRVLVASWVVQTV LGALSVVLGGTLYIGHYLAMYSEGAPFWTGIVAMLAGAVAFLHKKRGGTCWALMRTLLVLASFCTAVAAI VIGSRELNFYWYFLGDDVCQRDSSYGWSTMPRTTPVPEEADRIALCIYYTSMLKTLLMSLQAMLLGIWVL LLLASLTPVCVYIWKRFFTKAETEEKKLLGAAVI
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