NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS41022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41022.1 Public Mus musculus X Fam3a 23 108 98 CCDS HistoryNCBI Gene:66294Re-query CCDS DB by CCDS ID:41022.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015427.12 ENSMUSP00000015427.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015427.12Link to Ensembl Protein Viewer:ENSMUSP00000015427.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000015427Re-query CCDS DB by Protein ID:ENSMUSP00000015427
Original member Current member EBI ENSMUST00000114142.7 ENSMUSP00000109778.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114142.7Link to Ensembl Protein Viewer:ENSMUSP00000109778.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114142Re-query CCDS DB by Protein ID:ENSMUSP00000109778
Original member Current member EBI ENSMUST00000114143.9 ENSMUSP00000109779.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114143.9Link to Ensembl Protein Viewer:ENSMUSP00000109779.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114143Re-query CCDS DB by Protein ID:ENSMUSP00000109779
Original member NCBI NM_001313725.1 NP_001300654.1 Updated not alive Link to Nucleotide Sequence:NM_001313725.1Link to Protein Sequence:NP_001300654.1Re-query CCDS DB by Nucleotide ID:NM_001313725Re-query CCDS DB by Protein ID:NP_001300654
Current member NCBI NM_001313725.2 NP_001300654.1 Accepted alive Link to Nucleotide Sequence:NM_001313725.2Link to Protein Sequence:NP_001300654.1Re-query CCDS DB by Nucleotide ID:NM_001313725Re-query CCDS DB by Protein ID:NP_001300654Link to BLAST:NP_001300654.1
Original member NCBI NM_025473.4 NP_079749.1 Updated not alive Link to Nucleotide Sequence:NM_025473.4Link to Protein Sequence:NP_079749.1Re-query CCDS DB by Nucleotide ID:NM_025473Re-query CCDS DB by Protein ID:NP_079749
Current member NCBI NM_025473.5 NP_079749.1 Accepted alive Link to Nucleotide Sequence:NM_025473.5Link to Protein Sequence:NP_079749.1Re-query CCDS DB by Nucleotide ID:NM_025473Re-query CCDS DB by Protein ID:NP_079749Link to BLAST:NP_079749.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300654.1 230 Q9D8T0 230 100% 0 0
NP_079749.1 230 Q9D8T0 230 100% 0 0

Chromosomal Locations for CCDS 41022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74385340 74385435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74386422 74386548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74386632 74386716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74387034 74387084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74387438 74387496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74387628 74387751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74390474 74390497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74390991 74391104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74392675 74392687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGAGGTTGGCAGGCCCCCTGCGCATCGTGGCCCTAATCATCATTATGGGTCTCACCTGGATCCTAGTCA
CCATCCTCCTAGGTGGTCCTGGTGTTGGCCTTCCTCGAATTCAGCAGTTCTTCACCAGCCCAGAGAACTC
AGTGACTGCAGAACCAAGGGCCAGGAAGTACAAATGCGGCCTGCCCCAGCCTTGTCCTGAAGAGCACCTG
AGCTTTCGAATAGTCAGCGGGGCTGCCAATGTCATCGGGCCCAAGATCTGCCTCGAGGACAAGATGCTCA
TGAGCAGCGTCAAAGACAATGTGGGCCGTGGCCTGAACATCGCCCTGGTGAATGGGGTCAGTGGTGAGCT
CCTAGAAGCCAGAGCCTTTGACATGTGGGCTGGAGATGTCAATGATCTCTTGAAGTTCATCCGGCCACTG
CATGAAGGTACCCTGGTGTTTGTGGCTTCCTATGATGATCCAGCTACCAAGATGAATGAAGAGACCAGGA
AGCTTTTTTCTGAGCTGGGCAGCAGGAATGCCAAGGATCTAGCCTTCCGTGACAGCTGGGTGTTTGTGGG
AGCCAAAGGTGTGCAGAACAAGAGCCCCTTTGAGCAGCATATGAAGAACAGTAAGCACACCAACAAGTAT
GAGGGCTGGCCAGAGGCCCTGGAGATGGAAGGCTGTATCCCTCGAAGGAGCATAGCGGGCTAG

Translation (230 aa):
MRLAGPLRIVALIIIMGLTWILVTILLGGPGVGLPRIQQFFTSPENSVTAEPRARKYKCGLPQPCPEEHL
SFRIVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELLEARAFDMWAGDVNDLLKFIRPL
HEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKDLAFRDSWVFVGAKGVQNKSPFEQHMKNSKHTNKY
EGWPEALEMEGCIPRRSIAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH