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Report for CCDS29605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29605.1 Public Mus musculus 19 Ms4a3 23 108 98 CCDS HistoryNCBI Gene:170813Re-query CCDS DB by CCDS ID:29605.1Re-query CCDS DB by GeneID:170813See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112984.3 ENSMUSP00000108608.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112984.3Link to Ensembl Protein Viewer:ENSMUSP00000108608.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112984Re-query CCDS DB by Protein ID:ENSMUSP00000108608
Original member Current member EBI ENSMUST00000186023.6 ENSMUSP00000140508.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186023.6Link to Ensembl Protein Viewer:ENSMUSP00000140508.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186023Re-query CCDS DB by Protein ID:ENSMUSP00000140508
Original member Current member NCBI NM_133246.5 NP_573509.1 Accepted alive Link to Nucleotide Sequence:NM_133246.5Link to Protein Sequence:NP_573509.1Re-query CCDS DB by Nucleotide ID:NM_133246Re-query CCDS DB by Protein ID:NP_573509Link to BLAST:NP_573509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573509.1 213 Q920C4 213 100% 0 0

Chromosomal Locations for CCDS 29605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11629658 11629756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11631344 11631445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11632756 11632914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11635811 11635867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11638186 11638323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11639190 11639276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGAAGCCAGAGGAGACTGGTGGTTCTGTTTATCAGCCCTTGGATGAGTCACGCCATGTTCAACGAGGTG
TACTGCAAGCCCTCGGGGCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGT
TTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTG
TGGGGTGCTGTGTTTTTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGC
TGATGCAAAACAGTTTTGGGATAAACATTGCCAGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTC
TGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATT
TCCCTGGGTTCCTCATCAGATGGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGA
CCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGGCAATTACTTCACCTCC
TAATTCTGTGGAGTCAGGAATACTTCCTGAAGGAAGTGATTCTGAGAACCTGAACACTCAGCCCCAAGCT
TCAGAAGAGTGA

Translation (213 aa):
MKPEETGGSVYQPLDESRHVQRGVLQALGAIQILNGILILALGIFLVCLQHVSHHFRHFFFFTFYTGYPL
WGAVFFISSGSLTVAAGRNPTRMLMQNSFGINIASTTIAFVGTVFLSVHLAFNTQAFKGCQSSPSPDVCI
SLGSSSDGLVSLMLILTLLELSVTISISAMWCLGNVCGLREAITSPPNSVESGILPEGSDSENLNTQPQA
SEE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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