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Report for CCDS2904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2904.1 Public Homo sapiens 3 MAGI1 24 110 108 CCDS HistoryNCBI Gene:9223Re-query CCDS DB by CCDS ID:2904.1Re-query CCDS DB by GeneID:9223See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2904.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000483466.5 ENSP00000420323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000483466.5Link to Ensembl Protein Viewer:ENSP00000420323.1Re-query CCDS DB by Nucleotide ID:ENST00000483466Re-query CCDS DB by Protein ID:ENSP00000420323
Original member Current member NCBI NM_004742.3 NP_004733.2 Accepted alive Link to Nucleotide Sequence:NM_004742.3Link to Protein Sequence:NP_004733.2Re-query CCDS DB by Nucleotide ID:NM_004742Re-query CCDS DB by Protein ID:NP_004733Link to BLAST:NP_004733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004733.2 1256 Q96QZ7-3 1256 100% 0 0

Chromosomal Locations for CCDS 2904.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 65361149 65361337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65363465 65363608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65364665 65364725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65364853 65364946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65375745 65375948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65379261 65379554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65381877 65382069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65383532 65383623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65387143 65387226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65391142 65391358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65401439 65401470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65429520 65430140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65430699 65430881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65437155 65437247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65439879 65440012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65442792 65442849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65448022 65448057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65453258 65453340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65470283 65470484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65478592 65478798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65493512 65493631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65621972 65622088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66037996 66038308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3771 nt):
ATGTCCAAAGTGATCCAGAAGAAGAACCACTGGACTAGCAGGGTTCACGAATGCACCGTGAAGCGGGGAC
CC
CAGGGCGAGCTGGGGGTGACGGTGCTGGGAGGCGCGGAGCACGGGGAGTTTCCGTACGTCGGAGCGGT
G
GCGGCGGTCGAGGCAGCGGGGCTTCCCGGCGGCGGCGAGGGCCCGAGGCTGGGCGAAGGGGAGCTGCTT
CTG
GAGGTGCAGGGGGTCCGGGTGTCCGGCTTGCCCCGCTATGACGTGCTGGGGGTCATCGACAGCTGCA
AG
GAGGCCGTCACCTTCAAGGCCGTCAGACAAGGAGGAAGGCTGAACAAGGACCTGCGACATTTTCTCAA
T
CAGCGATTCCAGAAGGGGTCTCCTGATCATGAGCTCCAGCAGACCATAAGGGATAACCTTTACCGCCAT
GCT
GTGCCTTGCACAACCCGATCTCCCAGAGAAGGAGAAGTGCCTGGCGTGGACTATAACTTTCTGACTG
TG
AAGGAGTTCTTGGACCTCGAGCAGAGTGGGACTCTTCTGGAAGTCGGCACCTATGAAGGAAACTATTA
T
GGGACACCCAAGCCTCCTAGCCAGCCAGTCAGTGGGAAAGTGATCACGACGGATGCCTTGCACAGCCTT
CAG
TCTGGCTCTAAGCAGTCGACCCCGAAGCGAACCAAGTCCTACAATGATATGCAAAATGCTGGCATAG
TC
CACGCGGAGAATGAGGAGGAGGATGACGTTCCTGAAATGAACAGCAGCTTTACAGCCGATTCTGGTGA
A
CAAGAGGAGCACACTCTCCAAGAAACAGCATTACCACCTGTGAATAGTAGCATCATCGCTGCTCCCATC
ACG
GACCCTTCTCAGAAGTTCCCTCAATACCTACCTCTTTCTGCAGAGGATAATTTAGGTCCTCTACCTG
AA
AACTGGGAGATGGCCTATACTGAAAATGGAGAAGTCTATTTTATAGACCATAACACGAAAACAACATC
T
TGGTTAGACCCTCGGTGCCTAAACAAGCAGCAGAAGCCACTGGAAGAGTGTGAAGATGATGAAGGGGTA
CAC
ACCGAGGAGCTGGACAGTGAACTAGAACTGCCTGCTGGTTGGGAAAAGATTGAAGACCCTGTCTATG
GT
ATCTACTATGTAGACCACATCAACAGGAAGACACAATATGAGAACCCGGTTCTAGAAGCCAAACGGAA
G
AAGCAGCTTGAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAG
ACAGAAGAATGGACAGAAGATCACTCAGCCCTTGTGCCTCCTGTTATTCCAAACCACCCTCCAAGCA
AT
CCAGAGCCAGCCAGAGAAGTTCCACTTCAGGGCAAACCCTTTTTTACACGAAACCCTTCTGAGTTGAA
A
GGCAAGTTCATTCACACAAAGCTGCGGAAAAGCAGTCGTGGCTTTGGCTTCACGGTGGTTGGAGGGGAT
GAA
CCTGATGAGTTTCTCCAGATCAAGAGCTTGGTCCTAGATGGTCCTGCTGCATTGGATGGCAAGATGG
AA
ACAGGGGATGTGATTGTAAGTGTGAATGACACCTGTGTTTTGGGACACACACATGCTCAAGTTGTGAA
G
ATCTTCCAGTCCATCCCCATTGGTGCCAGCGTGGACCTTGAACTCTGCCGAGGTTATCCATTGCCTTTT
GAT
CCAGATGACCCCAATACAAGTTTAGTGACCTCGGTAGCCATTTTGGATAAAGAACCAATTATTGTGA
AT
GGGCAAGAGACCTATGATTCACCAGCTAGCCACAGTAGTAAAACAGGCAAAGTCAATGGCATGAAGGA
T
GCCAGGCCAAGCAGCCCAGCGGACGTGGCTTCAAATAGTTCTCATGGTTATCCTAATGACACTGTTTCT
TTG
GCTTCCTCCATAGCCACTCAGCCAGAACTCATAACTGTTCATATTGTCAAAGGGCCAATGGGCTTTG
GT
TTTACTATCGCAGACAGTCCTGGTGGGGGTGGCCAAAGAGTGAAACAGATTGTTGACAGCCCAAGGTG
C
CGAGGCCTGAAAGAAGGGGATCTCATAGTGGAAGTTAATAAGAAGAACGTGCAGGCCCTAACTCACAAC
CAA
GTGGTGGATATGCTGGTTGAGTGTCCTAAGGGAAGTGAGGTCACATTGTTGGTGCAACGAGGAGGGC
TG
CCAGTTCCCAAGAAGAGCCCAAAGTCGCAACCACTGGAAAGGAAAGACAGCCAGAATAGTTCTCAGCA
C
AGTGTTTCCAGCCACCGAAGCCTGCACACAGCATCCCCAAGCCACAGCACACAGGTGCTCCCCGAGTTC
CCA
CCTGCAGAGGCCCAAGCTCCAGATCAAACTGACAGCTCTGGCCAGAAAAAACCAGATCCTTTTAAAA
TC
TGGGCCCAGTCCAGGAGCATGTATGAAAACCGACCTATGTCACCTTCACCTGCGTCGGGATTGAGCAA
G
GGTGAGAGAGAGAGAGAAATCAATTCCACGAATTTTGGAGAATGTCCGATTCCAGATTACCAGGAACAG
GAC
ATCTTCCTCTGGAGAAAAGAGACTGGATTTGGATTTAGGATTCTGGGTGGAAATGAACCAGGGGAAC
CT
ATTTATATTGGTCACATCGTACCACTGGGTGCTGCTGATACTGACGGCCGCCTGAGGTCTGGAGATGA
A
TTAATCTGTGTGGATGGGACGCCAGTAATTGGAAAATCACACCAGCTTGTGGTCCAGCTTATGCAACAA
GCT
GCCAAGCAAGGCCACGTCAATCTCACGGTGCGGCGTAAAGTGGTTTTTGCGGTGCCCAAAACCGAGA
AC
GAGGTGCCCTCGCCAGCCTCCTCTCATCACAGTAGCAACCAGCCGGCCTCGCTGACAGAAGAGAAGCG
C
ACTCCGCAGGGCAGCCAGAACTCGCTGAACACGGTGAGCTCGGGCAGCGGCAGCACCAGCGGCATCGGC
AGT
GGCGGCGGCGGGGGCAGCGGCGTGGTCAGCACCGTGGTGCAGCCCTACGACGTGGAGATCCGGCGCG
GG
GAGAACGAGGGCTTCGGCTTCGTCATCGTGTCCTCGGTGAGCAGGCCCGAAGCAGGCACGACCTTTGC
A
GGCAATGCATGTGTGGCTATGCCTCACAAAATAGGTCGGATTATTGAGGGGAGCCCTGCTGACCGCTGT
GGC
AAGCTGAAAGTAGGAGACCGGATCTTGGCAGTAAATGGATGTTCCATCACCAACAAATCCCATTCAG
AC
ATTGTGAACCTAATCAAGGAAGCGGGAAACACAGTTACCCTCCGCATCATTCCTGGGGATGAGTCCTC
G
AATGCCACCTTGCTGACCAATGCAGAGAAGATTGCCACCATCACCACCACACACACCCCTTCTCAGCAA
GGG
ACCCAGGAGACAAGGAATACCACCAAACCAAAGCAGGAATCTCAATTTGAGTTCAAAGCACCCCAAG
CA
ACACAGGAGCAAGATTTTTACACTGTGGAACTGGAAAGAGGAGCCAAGGGATTTGGCTTTAGCCTTCG
A
GGAGGCCGAGAGTATAACATGGACCTCTATGTTCTGCGCTTAGCAGAGGACGGTCCTGCGGAGAGGTGT
GGA
AAGATGAGGATTGGTGATGAAATTTTAGAGATCAATGGTGAGACCACCAAAAACATGAAGCATTCTC
GA
GCTATAGAACTGATTAAGAATGGTGGCCGCAGAGTTCGTCTGTTTCTGAAGCGGGGAGACGGCTCAGT
A
CCAGAATATGGTGGGTCAAACTATGAAAACATTCCTTCCTTCCCTGGCATGACTCCATGA


Translation (1256 aa):
MSKVIQKKNHWTSRVHECTVKRGPQGELGVTVLGGAEHGEFPYVGAVAAVEAAGLPGGGEGPRLGEGELL
L
EVQGVRVSGLPRYDVLGVIDSCKEAVTFKAVRQ
GGRLNKDLRHFLNQRFQKGSPDHELQQTIRDNLYRH
A
VP
CTTRSPREGEVPGVDYNFLTVKEFLDLEQSGTLLEVGTYEGNYYGTPKPPSQPVSGKVITTDALHSL
Q
SGSKQSTPKRTKSYNDMQNAGIVHAENEEEDDVPEMNSSFT
ADSGEQEEHTLQETALPPVNSSIIAAPI
T
DPSQKFPQYLPLSAEDNLGPLPENWEMAYTENGEVYFI
DHNTKTTSWLDPRCLNKQQKPLEECEDDEGV
H
TEELDSEL
ELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQLEQQQQQQQQQQQQQQQQQQQ
Q
TE
EWTEDHSALVPPVIPNHPPSNPEPAREVPLQGKPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGD
E
PDEFLQIKSLVLDGPAALDGKMET
GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPF
D
PDDPNTSLVTSVAILDKEPIIVNGQETYDSPASHSSKTGKVNGMKDARPSSPADVASNSSHGYPNDTVS
L
ASSIATQPELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRCRGLKEGDLIVEVNKKNVQALTHN
Q
VVDMLVECPKGSEVTLLVQRG
GLPVPKKSPKSQPLERKDSQNSSQHSVSSHRSLHTASPSHSTQVLPEF
P
PAEAQAPDQTDSSGQKKPDPFKIWAQSRSMYENR
PMSPSPASGLSKGEREREINSTNFGECPIPDYQEQ
D
IFLWRKETGFGFRILGGNEPGEP
IYIGHIVPLGAADTDGRLRSGDELICVDGTPVIGKSHQLVVQLMQQ
A
AKQGHVNLTVRRKVVFA
VPKTENEVPSPASSHHSSNQPASLTEEKRTPQGSQNSLNTVSSGSGSTSGIG
S
GGGGGSGVVSTVVQPYDVEIRRGENEGFGFVIVSSVSRPEAGTTF
AGNACVAMPHKIGRIIEGSPADRC
G
KLKVGDRILAVNGCSITNKSHSDIVNLIKEAGNTVTLRIIPGD
ESSNATLLTNAEKIATITTTHTPSQQ
G
TQET
RNTTKPKQESQFEFKAPQATQEQDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERC
G
KMR
IGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGDGSVPEYGGSNYENIPSFPGMTP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser