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Report for CCDS22627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22627.1 Public Mus musculus 8 Dus2 23 108 98 CCDS HistoryNCBI Gene:66369Re-query CCDS DB by CCDS ID:22627.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034375.10 ENSMUSP00000034375.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034375.10Link to Ensembl Protein Viewer:ENSMUSP00000034375.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034375Re-query CCDS DB by Protein ID:ENSMUSP00000034375
Original member Current member NCBI NM_025518.4 NP_079794.1 Accepted alive Link to Nucleotide Sequence:NM_025518.4Link to Protein Sequence:NP_079794.1Re-query CCDS DB by Nucleotide ID:NM_025518Re-query CCDS DB by Protein ID:NP_079794Link to BLAST:NP_079794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079794.1 493 Q9D7B1 493 100% 0 0

Chromosomal Locations for CCDS 22627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106015840 106015965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106025906 106025951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106030352 106030443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106031698 106031741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106033723 106033783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106035978 106036025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106041824 106041889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106042026 106042096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106044798 106044884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106045901 106046069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106048653 106048774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106050317 106050466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106051802 106051889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106053006 106053079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106053292 106053529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGATTGTGAACAGCCTCTCCCTGTGCTACCACAATAAGCTCATCTTAGCCCCGATGGTTCGGGTGGGGA
CTCTGCCAATGCGCCTCCTAGCCCTGGATTATGGAGCGGACATTGTTTACTGTGAGGAGCTGATTGACCT
CAAGATGCTCCAGTGCAAGCGAGTTGTAAACGAGGTGCTCAGCACAGTGGACTTTGTTGCTCCTGATGAC
CGGGTAGTCTTCCGTACGTGTGAAAGAGAACAGAGCAGGGTGGTCTTCCAGATGGGGACTTCAGACGCAG
AGCGAGCCCTTGCTGTGGCCAGGCTTGTAGAAAATGATGTAGCTGGTATTGATGTCAACATGGGCTGTCC
AAAAGAGTATTCCACTAAGGGAGGAATGGGAGCCGCTCTGCTGTCAGACCCTGACAAGATCGAGAAGATC
CTCAGCACTCTTGTTAAAGGGACACACAGACCTGTGACCTGTAAAATCCGAATCCTGCCCTCGCTGGAAG
ATACCCTGAACTTGGTGAAGCGGATAGAGAGGACTGGCATTTCAGCCATTGCAGTTCATGGGAGGAATCG
TGACGAGCGACCTCAGCACCCGGTCAGCTGTGAAGTTATAAGAGCCATTGCTGAAACCCTCTCCATTCCT
GTCATAGCCAACGGAGGATCTCATGACCATATCCAGCAACATGTGGACATAGAAGACTTTCGACAAGCCA
CGGCTGCCTCCTCTGTGATGGTGGCTCGAGCAGCCATGTGGAACCCCTCCATCTTCCTCAAGGATGGCCT
TCGTCCCCTGGAGGAAGTCATGCAGAAGTACATCAGATATGCGGTGCAGTATGATAACCACTACACCAAC
ACCAAGTACTGCTTGTGCCAAATGCTGCGGGAACAGTTGGAGTCGCCCCAGGGAAGACTGCTTCATGCTG
CCCAGTCTTCCCAGGAAATTTGTGAGGCCTTTGGCCTTGGTGCCTTCTATGAGGAGACCATTCGGGAGCT
CGATGCTCGGCGAGCTGACCTCCTGGCCAAGACTCCAGAGGCTGTTGAGGAGCCAGCTGAAGATACTTCT
GGCATCATTAAAATGGCTATCAGGTTTGACCGGAGAGCATATCCACCCCAGATCACTCCCAAGATGTGCC
TGCTGGAATGGTGTCGGAGGGAGAAGCTGCCACAACCTGTGTATGAAACAGTTCAGCGAACTATAGATCG
CATGTTTTGCTCTGTTGTCACTGTTGCGGAACAAAAGTACCAGTCCACCTTGTGGGACAAGTCCAAGAAA
CTGGCGGAGCAGACTGCAGCAATTGTGTGTCTTAGGAGCCAGGGCCTCCCTGAGGGTCGGCTGGGTGAGG
AGAGTCCCTCCTTGAACAAGCGCAAGCGAGAGGCCCCTGACCAAGACCCTGGGGGCCCAAGAGTTCAGGA
GCCAGCACTACCTGGGGAGATATGCAAGAAGCCATTTGTAACCTTGGACAGTAGTGAGGAGAATCTTCTG
GAAGGCTGCTGA

Translation (493 aa):
MIVNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDD
RVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEKI
LSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQHPVSCEVIRAIAETLSIP
VIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPSIFLKDGLRPLEEVMQKYIRYAVQYDNHYTN
TKYCLCQMLREQLESPQGRLLHAAQSSQEICEAFGLGAFYEETIRELDARRADLLAKTPEAVEEPAEDTS
GIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKK
LAEQTAAIVCLRSQGLPEGRLGEESPSLNKRKREAPDQDPGGPRVQEPALPGEICKKPFVTLDSSEENLL
EGC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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