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Report for CCDS6334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6334.1 Public Homo sapiens 8 SNTB1 24 110 108 CCDS HistoryNCBI Gene:6641Re-query CCDS DB by CCDS ID:6334.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6334.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395601.7 ENSP00000378965.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395601.7Link to Ensembl Protein Viewer:ENSP00000378965.3Re-query CCDS DB by Nucleotide ID:ENST00000395601Re-query CCDS DB by Protein ID:ENSP00000378965
Original member Current member EBI ENST00000517992.2 ENSP00000431124.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517992.2Link to Ensembl Protein Viewer:ENSP00000431124.1Re-query CCDS DB by Nucleotide ID:ENST00000517992Re-query CCDS DB by Protein ID:ENSP00000431124
Original member Current member NCBI NM_021021.4 NP_066301.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021021.4Link to Protein Sequence:NP_066301.1Re-query CCDS DB by Nucleotide ID:NM_021021Re-query CCDS DB by Protein ID:NP_066301Link to BLAST:NP_066301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066301.1 538 Q13884-1 538 100% 0 0

Chromosomal Locations for CCDS 6334.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 120538877 120538969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120541810 120542000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120548762 120548958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120575086 120575225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120632444 120632651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120693692 120693908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120811273 120811843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGCGGTAGCGGCGGCGGCGGCGGCGGCTGGGCCGGCTGGCGCGGGAGGCGGCCGGGCGCAGCGGAGCG
GGCTGCTGGAAGTTTTGGTGCGGGATCGCTGGCACAAAGTTCTGGTGAACTTGAGCGAGGACGCCCTGGT
TCTGAGCAGCGAGGAGGGCGCTGCGGCGTACAACGGCATCGGGACCGCCACCAATGGCTCGTTCTGCAGG
GGCGCCGGGGCTGGGCACCCGGGCGCGGGCGGCGCGCAGCCCCCGGACTCGCCCGCCGGGGTCCGCACCG
CTTTCACCGACCTGCCCGAGCAGGTGCCCGAGTCCATCTCGAACCAGAAGCGTGGCGTGAAGGTGCTGAA
GCAGGAGCTGGGCGGGCTGGGGATCAGCATCAAGGGGGGCAAGGAGAACAAGATGCCCATCCTCATCAGC
AAGATCTTCAAGGGGCTGGCGGCGGACCAGACCCAAGCCCTGTACGTGGGCGACGCCATCCTGTCCGTGA
ACGGAGCCGACCTGCGGGACGCCACCCACGACGAGGCGGTGCAGGCGTTGAAGCGCGCGGGCAAGGAAGT
GCTGCTGGAAGTGAAGTACATGCGAGAAGCCACGCCCTATGTGAAGAAAGGATCCCCAGTATCCGAGATT
GGGTGGGAAACACCTCCGCCTGAATCCCCTCGGTTAGGGGGCAGCACCTCAGACCCCCCGTCATCGCAGT
CCTTCTCCTTCCACAGAGACCGGAAAAGCATCCCCCTCAAAATGTGCTACGTCACTCGGAGTATGGCCTT
GGCCGACCCTGAGAACAGGCAGCTTGAAATCCACTCTCCAGATGCTAAGCACACGGTGATCCTAAGGAGC
AAGGACTCAGCCACGGCCCAGGCATGGTTCAGTGCCATCCATTCCAACGTTAATGACCTGCTGACCCGAG
TGATTGCTGAGGTCAGAGAGCAGCTGGGGAAAACAGGCATTGCTGGGAGCCGAGAGATTAGGCATCTTGG
CTGGCTTGCAGAAAAGGTGCCAGGGGAGAGCAAGAAACAGTGGAAACCAGCCCTGGTTGTGCTGACTGAG
AAAGACCTTTTAATCTATGACAGCATGCCACGGAGGAAGGAAGCCTGGTTCAGCCCAGTTCACACATACC
CTCTTCTTGCCACCAGGCTGGTCCATTCAGGTCCAGGAAAGGGATCACCCCAGGCTGGTGTGGATCTGTC
CTTTGCAACGCGAACTGGTACCAGGCAAGGGATTGAAACACATCTCTTCAGAGCAGAGACCAGCAGGGAC
CTCTCCCACTGGACAAGGAGCATAGTACAGGGTTGCCACAATTCTGCTGAACTCATTGCTGAAATCAGCA
CTGCTTGCACCTACAAAAACCAGGAGTGCCGTTTGACCATACATTATGAGAATGGATTTTCTATTACCAC
TGAACCACAGGAGGGTGCCTTTCCCAAGACCATCATACAGTCTCCTTATGAAAAGCTCAAAATGTCTTCA
GATGATGGAATCAGGATGCTGTATTTAGATTTTGGAGGCAAAGATGGAGAGATTCAACTGGACCTTCATT
CCTGCCCCAAGCCAATTGTTTTCATCATTCATTCCTTCCTGTCAGCTAAGATTACAAGACTGGGCTTGGT
GGCCTGA

Translation (538 aa):
MAVAAAAAAAGPAGAGGGRAQRSGLLEVLVRDRWHKVLVNLSEDALVLSSEEGAAAYNGIGTATNGSFCR
GAGAGHPGAGGAQPPDSPAGVRTAFTDLPEQVPESISNQKRGVKVLKQELGGLGISIKGGKENKMPILIS
KIFKGLAADQTQALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEI
GWETPPPESPRLGGSTSDPPSSQSFSFHRDRKSIPLKMCYVTRSMALADPENRQLEIHSPDAKHTVILRS
KDSATAQAWFSAIHSNVNDLLTRVIAEVREQLGKTGIAGSREIRHLGWLAEKVPGESKKQWKPALVVLTE
KDLLIYDSMPRRKEAWFSPVHTYPLLATRLVHSGPGKGSPQAGVDLSFATRTGTRQGIETHLFRAETSRD
LSHWTRSIVQGCHNSAELIAEISTACTYKNQECRLTIHYENGFSITTEPQEGAFPKTIIQSPYEKLKMSS
DDGIRMLYLDFGGKDGEIQLDLHSCPKPIVFIIHSFLSAKITRLGLVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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