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Report for CCDS36812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36812.1 Public Mus musculus 14 Rpl15 23 108 98 CCDS HistoryNCBI Gene:66480Re-query CCDS DB by CCDS ID:36812.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079419.11 ENSMUSP00000078388.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079419.11Link to Ensembl Protein Viewer:ENSMUSP00000078388.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079419Re-query CCDS DB by Protein ID:ENSMUSP00000078388
Original member Current member EBI ENSMUST00000080281.13 ENSMUSP00000079163.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080281.13Link to Ensembl Protein Viewer:ENSMUSP00000079163.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000080281Re-query CCDS DB by Protein ID:ENSMUSP00000079163
Original member Current member EBI ENSMUST00000100799.8 ENSMUSP00000098362.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100799.8Link to Ensembl Protein Viewer:ENSMUSP00000098362.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100799Re-query CCDS DB by Protein ID:ENSMUSP00000098362
Original member Current member EBI ENSMUST00000112598.8 ENSMUSP00000108217.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112598.8Link to Ensembl Protein Viewer:ENSMUSP00000108217.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112598Re-query CCDS DB by Protein ID:ENSMUSP00000108217
Original member Current member NCBI NM_001359897.1 NP_001346826.1 Accepted alive Link to Nucleotide Sequence:NM_001359897.1Link to Protein Sequence:NP_001346826.1Re-query CCDS DB by Nucleotide ID:NM_001359897Re-query CCDS DB by Protein ID:NP_001346826Link to BLAST:NP_001346826.1
Original member Current member NCBI NM_001359899.1 NP_001346828.1 Accepted alive Link to Nucleotide Sequence:NM_001359899.1Link to Protein Sequence:NP_001346828.1Re-query CCDS DB by Nucleotide ID:NM_001359899Re-query CCDS DB by Protein ID:NP_001346828Link to BLAST:NP_001346828.1
Original member Current member NCBI NM_025586.3 NP_079862.1 Accepted alive Link to Nucleotide Sequence:NM_025586.3Link to Protein Sequence:NP_079862.1Re-query CCDS DB by Nucleotide ID:NM_025586Re-query CCDS DB by Protein ID:NP_079862Link to BLAST:NP_079862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346826.1 204 Q9CZM2 204 100% 0 0
NP_001346828.1 204 Q9CZM2 204 100% 0 0
NP_079862.1 204 Q9CZM2 204 100% 0 0

Chromosomal Locations for CCDS 36812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 18269011 18269316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18269907 18270043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18270279 18270450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGGTGCATACAAGTACATCCAGGAGCTATGGAGGAAGAAGCAGTCCGACGTGATGCGCTTTCTTCTGA
GGGTCCGCTGTTGGCAATACCGCCAGCTCTCTGCGCTGCACAGGGCTCCCCGCCCCACCCGGCCTGATAA
AGCTCGAAGACTGGGATACAAGGCTAAGCAAGGCTATGTCATTTACAGGATTCGTGTCCGCCGTGGTGGT
CGTAAACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCCACCATGGTGTTAACCAGCTGAAAT
TTGCCCGAAGCCTTCAGTCTGTTGCTGAGGAGAGAGCTGGGCGCCATTGTGGGGCTTTGAGAGTCCTGAA
TTCCTACTGGGTTGGTGAAGATTCCACATATAAATTTTTTGAGGTTATCCTCATTGATCCGTTCCATAAA
GCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAACACAGAGAAATGCGTGGGC
TGACATCTGCTGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGTTC
CCGCCGTGCAGCCTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAA

Translation (204 aa):
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG
RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK
AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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