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Report for CCDS37456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37456.1 Public Mus musculus 17 Lix1 23 108 98 CCDS HistoryNCBI Gene:66643Re-query CCDS DB by CCDS ID:37456.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115576.2 ENSMUSP00000111239.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115576.2Link to Ensembl Protein Viewer:ENSMUSP00000111239.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115576Re-query CCDS DB by Protein ID:ENSMUSP00000111239
Original member Current member NCBI NM_025681.2 NP_079957.2 Accepted alive Link to Nucleotide Sequence:NM_025681.2Link to Protein Sequence:NP_079957.2Re-query CCDS DB by Nucleotide ID:NM_025681Re-query CCDS DB by Protein ID:NP_079957Link to BLAST:NP_079957.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079957.2 282 Q6P566 282 100% 0 0

Chromosomal Locations for CCDS 37456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17402945 17403026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17427156 17427319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17443648 17443788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17445968 17446063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17454260 17454337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17457106 17457393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGACAGAACCTTGGAATCTCTGAGGCACATCATTGCCCAAGCCTTGCCTCACAGAGACCCGGCTTTGG
TCTTCAAAGACTTGAATGTTGTGTCAATGTTACAGGAATTTTGGGAAAGCAAGCAGCAGCAGAAAGCCAC
CTTCTCCAGTGAGGGACTGGTGGTCTATGAGTCAATGCCTTCCTCTGGGCCTCCCTTTGTGAGCTATGTG
ACTCTCCCTGGAGGGAGCTGCTTTGGCAACTTTCAGTGCTGCTTAAGTAGAGCTGAGGCCAGGCGGGATG
CTGCTAAAGTGGCGCTCATCAACTCTCTCTTCAATGAGCTACCCTCCCGAAGGATCACCAAGGAGTTCAT
CATGGAGAGTGTTCAGGAAGCAGTAGCCTCCACCAGGGGCACGTTAGATGATGCGGATGACCCAAGCACA
AGTGTGGGAGCCTATCACTACATGCTGGAGTCAAACATGGGGAAGACTATGCTGGAGTTTCAGGAACTAA
TGACCATTTTCCAACTACTGCACTGGAATGGAAGCCTGAAAGCCCTCCGTGAAACAAAGTGCTCTCGACA
GGAAGTCATCTCCTACTATTCCCAATATTCTTTAGATGAAAAGATGCGTAGCCACATGGCCCTGGACTGG
ATTATGAAGGAGCGTGAATCACCAGGAATTCTCTCTCAAGAGCTGCGTGCAGCCCTAGGGCAGCTGGAGG
AAGCCAGGAAGGCTGGACAAGAACTACGATTTTACAAAGAAAAAAAAGAAATCCTGAGCTTGGCCCTGAC
TCAGATCTATAGTGACCCTGACCCTTCCTCACCCAGTGATGACCAGCTAAGCCTCACGGCTCTGTGTGGC
TATCATTAG

Translation (282 aa):
MDRTLESLRHIIAQALPHRDPALVFKDLNVVSMLQEFWESKQQQKATFSSEGLVVYESMPSSGPPFVSYV
TLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESVQEAVASTRGTLDDADDPST
SVGAYHYMLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDEKMRSHMALDW
IMKERESPGILSQELRAALGQLEEARKAGQELRFYKEKKEILSLALTQIYSDPDPSSPSDDQLSLTALCG
YH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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