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Report for CCDS25554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25554.1 Public Mus musculus 11 Gh 23 108 98 CCDS HistoryNCBI Gene:14599Re-query CCDS DB by CCDS ID:25554.1Re-query CCDS DB by GeneID:14599See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103071.3 ENSMUSP00000099360.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103071.3Link to Ensembl Protein Viewer:ENSMUSP00000099360.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103071Re-query CCDS DB by Protein ID:ENSMUSP00000099360
Original member Current member NCBI NM_008117.3 NP_032143.1 Accepted alive Link to Nucleotide Sequence:NM_008117.3Link to Protein Sequence:NP_032143.1Re-query CCDS DB by Nucleotide ID:NM_008117Re-query CCDS DB by Protein ID:NP_032143Link to BLAST:NP_032143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032143.1 216 P06880 216 100% 0 0

Chromosomal Locations for CCDS 25554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106300366 106300566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106300765 106300926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106301095 106301211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106301396 106301556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106301740 106301749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGCTACAGACTCTCGGACCTCCTGGCTCCTGACCGTCAGCCTGCTCTGCCTGCTCTGGCCTCAGGAGG
CTAGTGCTTTTCCCGCCATGCCCTTGTCCAGTCTGTTTTCTAATGCTGTGCTCCGAGCCCAGCACCTGCA
CCAGCTGGCTGCTGACACCTACAAAGAGTTCGAGCGTGCCTACATTCCCGAGGGACAGCGCTATTCCATT
CAGAATGCCCAGGCTGCTTTCTGCTTCTCAGAGACCATCCCGGCCCCCACAGGCAAGGAGGAGGCCCAGC
AGAGAACCGACATGGAATTGCTTCGCTTCTCGCTGCTGCTCATCCAGTCATGGCTGGGGCCCGTGCAGTT
CCTCAGCAGGATTTTCACCAACAGCCTGATGTTCGGCACCTCGGACCGTGTCTATGAGAAACTGAAGGAC
CTGGAAGAGGGCATCCAGGCTCTGATGCAGGAGCTGGAAGATGGCAGCCCCCGTGTTGGGCAGATCCTCA
AGCAAACCTATGACAAGTTTGACGCCAACATGCGCAGCGACGACGCGCTGCTCAAAAACTATGGGCTGCT
CTCCTGCTTCAAGAAGGACCTGCACAAAGCGGAGACCTACCTGCGGGTCATGAAGTGTCGCCGCTTTGTG
GAAAGCAGCTGTGCCTTCTAG

Translation (216 aa):
MATDSRTSWLLTVSLLCLLWPQEASAFPAMPLSSLFSNAVLRAQHLHQLAADTYKEFERAYIPEGQRYSI
QNAQAAFCFSETIPAPTGKEEAQQRTDMELLRFSLLLIQSWLGPVQFLSRIFTNSLMFGTSDRVYEKLKD
LEEGIQALMQELEDGSPRVGQILKQTYDKFDANMRSDDALLKNYGLLSCFKKDLHKAETYLRVMKCRRFV
ESSCAF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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